View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19305_high_6 (Length: 733)
Name: NF19305_high_6
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 262 - 721
Target Start/End: Complemental strand, 26834060 - 26833606
Alignment:
| Q |
262 |
cagagcattcttatttctcacaatcacagtgccatagctcttacagaaactgaaacccgcaagcannnnnnnnnnnnnnnnnnnctttcatttttccaac |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
26834060 |
cagagcattcttatttctcacaatcacagtgccatagctcttacagaaactgaaacccgcaagcactctctctctctc------ctttcaattttccaac |
26833967 |
T |
|
| Q |
362 |
catttacctgctttgcattgtcattgttctgttctgtctctcttttctttttcattaaggaaccataacatgcttagatcttcaagcatatcaacgtttt |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26833966 |
catttacctgctttgcattgtcattgttctgttctgtctctcttttctttttcattaaggaaccataacatgcttagatcttcaagcatatcaacgtttt |
26833867 |
T |
|
| Q |
462 |
gttaatttttctacctcttccacagtttcttttctgcatga-ccctggaaacaaaaacaagtttttctccttttctttaagtaaagttggttaaatttat |
560 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26833866 |
gttaatttttctacctctttcacagtttcttttctgcatgacccctggaaacaaaaacaagtttttctccttttctttaagtaaagttggttaaatttat |
26833767 |
T |
|
| Q |
561 |
tcnnnnnnncatttgaagtnnnnnnntgtatgcttttcaaggagcaaggaatggacttggtttacaactcgagtttcgttggagacaaatcagagagcca |
660 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
26833766 |
tcaaaaaaacatttgaagtaaaaaaatgtatgcttttcaaggagcaaggaatggacttggtttacaacacgagtttctttggagacaaatcagagagcca |
26833667 |
T |
|
| Q |
661 |
ttgatcgtgccattgctgagagttgcagtgtttctttgcctaggcatgtcgttgatgatgt |
721 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26833666 |
ttgatcgtgccattgctgagagttgcagtgtttgtttgcctaggcatgtcgttgatgatgt |
26833606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 26834299 - 26834085
Alignment:
| Q |
19 |
gatatcacagaggaaataccaatacttt--agcatagaaaattaaagataccaatgcaccaatgaaacaaatgtgttttaaaaaataaaacacctttggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26834299 |
gatatcacagaggaaataccaatactttttagcatagaaaattaaagataccaat-----------acaaatgtgttttaaaaaataaaacacctttggt |
26834211 |
T |
|
| Q |
117 |
cattctattctatataaccatcatgctcactaatgtgattgcaacagtt-----------annnnnnntttatgaggcagtgatagttcagctaaatcca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
26834210 |
cattctattctatataaccatcatgctcactaatatgattgcaacagttgggggggggggggggggggtttatgaggcagtgatagttcaactaaatcca |
26834111 |
T |
|
| Q |
206 |
ctataaaaagcaaacaacgctttaat |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26834110 |
ctataaaaagcaaacaacgctttaat |
26834085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 647 - 719
Target Start/End: Complemental strand, 26786891 - 26786819
Alignment:
| Q |
647 |
aaatcagagagccattgatcgtgccattgctgagagttgcagtgtttctttgcctaggcatgtcgttgatgat |
719 |
Q |
| |
|
|||| ||||| || |||||||||||| ||||||||| |||||||||| | |||||| ||||||| |||||||| |
|
|
| T |
26786891 |
aaataagagaacctttgatcgtgccaatgctgagagctgcagtgtttatctgcctaagcatgtcattgatgat |
26786819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University