View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_high_9 (Length: 597)
Name: NF19305_high_9
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 126 - 585
Target Start/End: Complemental strand, 26834060 - 26833606
Alignment:
| Q |
126 |
cagagcattcttatttctcacaatcacagtgccatagctcttacagaaactgaaacccgcaagcannnnnnnnnnnnnnnnnnnctttcatttttccaac |
225 |
Q |
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| T |
26834060 |
cagagcattcttatttctcacaatcacagtgccatagctcttacagaaactgaaacccgcaagcactctctctctctc------ctttcaattttccaac |
26833967 |
T |
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| Q |
226 |
catttacctgctttgcattgtcattgttctgttctgtctctcttttctttttcattaaggaaccataacatgcttagatcttcaagcatatcaacgtttt |
325 |
Q |
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| T |
26833966 |
catttacctgctttgcattgtcattgttctgttctgtctctcttttctttttcattaaggaaccataacatgcttagatcttcaagcatatcaacgtttt |
26833867 |
T |
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| Q |
326 |
gttaatttttctacctcttccacagtttcttttctgcatga-ccctggaaacaaaaacaagtttttctccttttctttaagtaaagttggttaaatttat |
424 |
Q |
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| T |
26833866 |
gttaatttttctacctctttcacagtttcttttctgcatgacccctggaaacaaaaacaagtttttctccttttctttaagtaaagttggttaaatttat |
26833767 |
T |
|
| Q |
425 |
tcnnnnnnncatttgaagtnnnnnnntgtatgcttttcaaggagcaaggaatggacttggtttacaactcgagtttcgttggagacaaatcagagagcca |
524 |
Q |
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| T |
26833766 |
tcaaaaaaacatttgaagtaaaaaaatgtatgcttttcaaggagcaaggaatggacttggtttacaacacgagtttctttggagacaaatcagagagcca |
26833667 |
T |
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| Q |
525 |
ttgatcgtgccattgctgagagttgcagtgtttctttgcctaggcatgtcgttgatgatgt |
585 |
Q |
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| T |
26833666 |
ttgatcgtgccattgctgagagttgcagtgtttgtttgcctaggcatgtcgttgatgatgt |
26833606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 26834142 - 26834085
Alignment:
| Q |
38 |
tttatgaggcagtgatagttcagctaaatccactataaaaagcaaacaacgctttaat |
95 |
Q |
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| T |
26834142 |
tttatgaggcagtgatagttcaactaaatccactataaaaagcaaacaacgctttaat |
26834085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 511 - 583
Target Start/End: Complemental strand, 26786891 - 26786819
Alignment:
| Q |
511 |
aaatcagagagccattgatcgtgccattgctgagagttgcagtgtttctttgcctaggcatgtcgttgatgat |
583 |
Q |
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|||| ||||| || |||||||||||| ||||||||| |||||||||| | |||||| ||||||| |||||||| |
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| T |
26786891 |
aaataagagaacctttgatcgtgccaatgctgagagctgcagtgtttatctgcctaagcatgtcattgatgat |
26786819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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