View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19305_low_10 (Length: 637)
Name: NF19305_low_10
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_10 |
 | |
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| [»] chr4 (10 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 76 - 637
Target Start/End: Original strand, 5181671 - 5182253
Alignment:
| Q |
76 |
agcaatgaattctcagtggaaactagtcttcaacactattctctaactatgtactctcnnnnnnncctgcagatgttcaacatttgggaaacttgaaaat |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
5181671 |
agcaatgaattctcagtggaaactagtcttcaacgctattctctaactatgtactctctttttttcctgcagatgttcaacatttgaaaaacttgaaaat |
5181770 |
T |
|
| Q |
176 |
gttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatcctaccaaacacaaataattaattcataactgcttcacgggatggttttgg |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5181771 |
gttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggttttgg |
5181870 |
T |
|
| Q |
276 |
ggatggattgttacaatgaagataactttt----------------ttaaataattaacaaaaacaatgaaataagttaattaatgtatatattgatgcc |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5181871 |
ggatggattgttacaatgaagataacttttatattgattttaaattttaaataattaacaaaaagaatgaaataagttaattaatgtatatattgacgcc |
5181970 |
T |
|
| Q |
360 |
attggaaaaacttt-aagatttttatgataatgtcaatttttgtaaagatgacaggacattgttaa----ttatgacaggactatgcaatttgaaggatt |
454 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
5181971 |
attggaaaaacttttaagatttttatgataatgtcaatttttgtatagatgacaggacatagttaattaattatgacaggactatgcaatttgaaggatt |
5182070 |
T |
|
| Q |
455 |
tagtagaactggatatcagcgataacatgtttagccctaaacttccagactgtttaagcaacttaacaaacctcagagttcttgaccttggcaataatct |
554 |
Q |
| |
|
| |||||| ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| | |||||||| |
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|
| T |
5182071 |
tggtagaattggatatcagctataacatgtttagtgctaaacttccagagtgtttaagcaacttaacaaaccttagagttcttgaacttagtaataatct |
5182170 |
T |
|
| Q |
555 |
gttcagtggaaattttccatccttcattagtaatctcacatctctgggattcttatcactctatggaaattacatgcaaggat |
637 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| |||| || |||||| |||||||||||||||||||||||| |
|
|
| T |
5182171 |
gttcagtggaaattttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggat |
5182253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 142 - 637
Target Start/End: Original strand, 5195135 - 5195647
Alignment:
| Q |
142 |
ctgcagatgttcaacatttgggaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatcctaccaaacacaaata |
241 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5195135 |
ctgcagatgttcaacatttgaaaaatttgaaaatgttaagtttaaacgataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaata |
5195234 |
T |
|
| Q |
242 |
attaattcataactgcttcacgggatggttttggggatggattgttacaatgaagataactttttt----------------aaataattaacaaaaaca |
325 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5195235 |
attaattcataattgcttcacgggatggttttggggatcgattgttacaatgaagataacttttttttttattttaaattttaaataattaacaaaaaca |
5195334 |
T |
|
| Q |
326 |
atgaaataagttaattaatgtatatattgatgccattggaaaaacttt-aagatttttatgataatgtcaatttttgtaaagatgacaggacattgttaa |
424 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5195335 |
acgaaataagttaattaatgtatatattgacgccattggaaaaacttttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaa |
5195434 |
T |
|
| Q |
425 |
ttatgacaggactatgcaatttgaaggatttagtagaactggatatcagcgataacatgtttagccctaaacttccagactgtttaagcaacttaacaaa |
524 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
5195435 |
ttatgacaggactatgcaattttaaggatttggtagaactggatatcagcaaaaacatgtttagtgctaaacttccagattgtttaagcaacttaacaaa |
5195534 |
T |
|
| Q |
525 |
cctcagagttcttgaccttggcaataatctgttcagtggaaattttccatccttcattagtaatctcacatctctgggattcttatcactctatggaaat |
624 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| || |||||| ||||||||||| |
|
|
| T |
5195535 |
cctcagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaat |
5195634 |
T |
|
| Q |
625 |
tacatgcaaggat |
637 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5195635 |
tacatgcaaggat |
5195647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 142 - 637
Target Start/End: Original strand, 5159502 - 5160005
Alignment:
| Q |
142 |
ctgcagatgttcaacatttgggaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatcctaccaaacacaaata |
241 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
5159502 |
ctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattgaaggtatgaatactaccaaacacaaata |
5159601 |
T |
|
| Q |
242 |
attaattcataactgcttcacgggatggttttggggatggattgttacaatgaagataactttttta----------------aataattaacaaaaaca |
325 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5159602 |
attaattcataactgcttcacgggatgg------------attgttacaatgaagataacttttttattgattttaaattttaaataattaacaaaaaca |
5159689 |
T |
|
| Q |
326 |
atgaaataagttaattaatgtatatattgatgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacattgttaa- |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5159690 |
atgaaataagttaattaatgtatatattgacgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaat |
5159789 |
T |
|
| Q |
425 |
---ttatgacaggactatgcaatttgaaggatttagtagaactggatatcagcgataacatgtttagccctaaacttccagactgtttaagcaacttaac |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||| |||| || ||||||||||||||||| |
|
|
| T |
5159790 |
taattatgacaggactatgcaatttgaaggatttggtagaactggatatcagccagaacatgtttagtgctaaatttcctgagtgtttaagcaacttaac |
5159889 |
T |
|
| Q |
522 |
aaacctcagagttcttgaccttggcaataatctgttcagtggaaattttccatccttcattagtaatctcacatctctgggattcttatcactctatgga |
621 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||||||| |||||||| |||||||| ||||||||||| |||| || |||||| |||||||| |
|
|
| T |
5159890 |
aaacctcagagttcttgaacttagtaataatctgttcagtggaaagtttccatctttcattagcaatctcacatcactggcatacttatccttctatgga |
5159989 |
T |
|
| Q |
622 |
aattacatgcaaggat |
637 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5159990 |
aattacatgcaaggat |
5160005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 314 - 637
Target Start/End: Complemental strand, 4842927 - 4842604
Alignment:
| Q |
314 |
ttaacaaaaacaatgaaataagttaattaatgtatatattgatgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacag |
413 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |
|
|
| T |
4842927 |
ttaacaaaaacaatgaaataagtaaattaatttatatattgagtccattggaaaaactttaagatttttatgataatgttaattttttgaaagatgaccg |
4842828 |
T |
|
| Q |
414 |
gacattgttaattatgacaggactatgcaatttgaaggatttagtagaactggatatcagcgataacatgtttagccctaaacttccagactgtttaagc |
513 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||||||| | |||||||||| || |||||||| |
|
|
| T |
4842827 |
gacatagttaattatgacaggactatgcaatttgaaggatttggaagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagt |
4842728 |
T |
|
| Q |
514 |
aacttaacaaacctcagagttcttgaccttggcaataatctgttcagtggaaattttccatccttcattagtaatctcacatctctgggattcttatcac |
613 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||| || ||||||||||| || ||||||||||| |
|
|
| T |
4842727 |
aacttaacaaacctcagaattcttgaccttagccataatctgttcggtggaaattttccatccttcactaccaatctcacatccttgacattcttatcac |
4842628 |
T |
|
| Q |
614 |
tctatggaaattacatgcaaggat |
637 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
4842627 |
tctatgaaaattacatgcaaggat |
4842604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 346 - 637
Target Start/End: Original strand, 5172630 - 5172921
Alignment:
| Q |
346 |
tatatattgatgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacattgttaattatgacaggactatgcaatt |
445 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |
|
|
| T |
5172630 |
tatatattgagtccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagataactggacatagttaattatgacaggactatgcaatt |
5172729 |
T |
|
| Q |
446 |
tgaaggatttagtagaactggatatcagcgataacatgtttagccctaaacttccagactgtttaagcaacttaacaaacctcagagttcttgaccttgg |
545 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||| | |||||||||| || |||||||| |||||||||||||||||| ||||||||||| | |
|
|
| T |
5172730 |
tgaaggatttggtagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttag |
5172829 |
T |
|
| Q |
546 |
caataatctgttcagtggaaattttccatccttcattagtaatctcacatctctgggattcttatcactctatggaaattacatgcaaggat |
637 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5172830 |
ccataatctattcagtggaaattttccatccttcattagtaatctcacatccttgacattcttatcactctatgaaaattacatgcaaggat |
5172921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 426 - 637
Target Start/End: Original strand, 5213602 - 5213813
Alignment:
| Q |
426 |
tatgacaggactatgcaatttgaaggatttagtagaactggatatcagcgataacatgtttagccctaaacttccagactgtttaagcaacttaacaaac |
525 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| || ||||||||| |||||||||||||| | ||||||| || ||||||||||||||||||||| |
|
|
| T |
5213602 |
tatgacaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaac |
5213701 |
T |
|
| Q |
526 |
ctcagagttcttgaccttggcaataatctgttcagtggaaattttccatccttcattagtaatctcacatctctgggattcttatcactctatggaaatt |
625 |
Q |
| |
|
|| | |||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||| |||||||| |
|
|
| T |
5213702 |
ctgaatgttcttgaacttagctataatttgttcagtggaaattttccatccttcattagtaatctcacatcactggcatacttatccctctttggaaatt |
5213801 |
T |
|
| Q |
626 |
acatgcaaggat |
637 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5213802 |
acatgcaaggat |
5213813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 4843133 - 4843028
Alignment:
| Q |
143 |
tgcagatgttcaacatttgggaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatcctaccaaacacaaataa |
242 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| ||| |||||| |||||| |
|
|
| T |
4843133 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaaggttaagcgataatcaaatgaagggctcaattgaaggtatcaatactatcaaacataaataa |
4843034 |
T |
|
| Q |
243 |
ttaatt |
248 |
Q |
| |
|
|||||| |
|
|
| T |
4843033 |
ttaatt |
4843028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 143 - 248
Target Start/End: Original strand, 5172489 - 5172594
Alignment:
| Q |
143 |
tgcagatgttcaacatttgggaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatcctaccaaacacaaataa |
242 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||||| |
|
|
| T |
5172489 |
tgcagatgttcaacacttgaaaaaattgaaaatgttaagtttaagctataatcaaatgaacggctcaattgaaggtatcaatactatcaaacataaataa |
5172588 |
T |
|
| Q |
243 |
ttaatt |
248 |
Q |
| |
|
|||||| |
|
|
| T |
5172589 |
ttaatt |
5172594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 5212716 - 5212815
Alignment:
| Q |
144 |
gcagatgttcaacatttgggaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatcctaccaaacacaaataat |
243 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| | || |||||||||||||||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
5212716 |
gcagatgttcaacatttgagaaacttgaaaatgctaagtttatgcaacaatcaaatgaacggctcacttgaaggtattaatattaccaaacacaaataat |
5212815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 563 - 637
Target Start/End: Complemental strand, 4857151 - 4857078
Alignment:
| Q |
563 |
gaaattttccatccttcattagtaatctcacatctctgggattcttatcactctatggaaattacatgcaaggat |
637 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| | || | |||| |||||||||||||||||||||||| |
|
|
| T |
4857151 |
gaaattttccatccttcactaccaatctcacatctcttgcatac-tatccatctatggaaattacatgcaaggat |
4857078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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