View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_13 (Length: 568)
Name: NF19305_low_13
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 25411644 - 25411334
Alignment:
| Q |
20 |
ctggtgtccgacatttgtacacgtgtcaaagaagtgtcccnnnnnnnnctttattttcttgcttcgacacacttttacactctttgaacacttctcagac |
119 |
Q |
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| T |
25411644 |
ctggtgtccgacatttgtacacgtgtcaaagaagtgtcccaaaaaaaactttattttcttgcttcgacacacttttacactctttgaacacttctcagac |
25411545 |
T |
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| Q |
120 |
acttttatgggggttaaagatgtgtcgaagcagtgattattaatgatggggatttggaaattaaaattgatagcatcatttttagctttttagttgcgta |
219 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| |
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| T |
25411544 |
acttttatgggggttaaagatgtgttgaagcagtgattattaatgatggggatttggaaattaaatttgatagcatcatttttagcttttcagttgagta |
25411445 |
T |
|
| Q |
220 |
gaggaatgaaaggaggtgaaaaattgtcgtattttgtttaagagcttttttgtaatgaaccaaattgcttaaattcgatgtacacatatatatatatttt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25411444 |
gaggaatgaaaggaggtgaaaaattgtcgtattttgtttaagagcttttttgtaatgaaccaaattgcttaaattcgatgtacacatat----atatttt |
25411349 |
T |
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| Q |
320 |
aattctcaatttaga |
334 |
Q |
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||||||||||||||| |
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| T |
25411348 |
aattctcaatttaga |
25411334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 383 - 556
Target Start/End: Complemental strand, 25411325 - 25411153
Alignment:
| Q |
383 |
ataaatatgtatgcatcggtgtcggtgtcctatattttaaatttagaagtgtttatgtgttcatgtccctgtcgtgtcagaatccgtgctttataggagt |
482 |
Q |
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| T |
25411325 |
ataaatatgtatgcatcggtgtcggtgtcctatattttaaatt-agcagtgtttacatgttcgtgtccgtgtcgtgtcagaatccgtgctttataggagt |
25411227 |
T |
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| Q |
483 |
atattcaattatatcattttctcgagtaaacagtgtcgacacgtcactatgtcagtgtgtgtttggtgtctgtg |
556 |
Q |
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| T |
25411226 |
atattcaattatatcattttctcgagtaaacagtgtcgacacgtcactatttcagtgtgtgtttggtgtctgtg |
25411153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 118 - 291
Target Start/End: Original strand, 28026550 - 28026723
Alignment:
| Q |
118 |
acacttttatgggggttaaagatgtgtcgaagcagtgattattaatgatggggatttggaaattaaaattgatagcatcatttttagctttttagttgcg |
217 |
Q |
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|||||| |||||| |||||||| |||| |||| |||||| || ||||||||||| |||| |||||| |||||||||| |||||||||| || |||| | |
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| T |
28026550 |
acacttctatgggagttaaagacgtgttgaagtagtgatgatcaatgatggggacgtggacattaaatttgatagcattatttttagctcttcagttaag |
28026649 |
T |
|
| Q |
218 |
tagaggaatgaaaggaggtgaaaaattgtcgtattttgtttaagagcttttttgtaatgaaccaaattgcttaa |
291 |
Q |
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| T |
28026650 |
tagtcggataaatggaggtgaaaaattgtcatattttggttaagaactttttcgtaatgaaccaagttgcttaa |
28026723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 8796838 - 8796749
Alignment:
| Q |
81 |
cttcgacacacttttacactctttgaacacttctcagacacttttatgggggttaaagatgtgtcgaagcagtgattattaatgatgggg |
170 |
Q |
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| T |
8796838 |
cttcgacacacttttacactccttagacacttctcgaacacttctatggggattaaagatgtgtcaaagtagtgatgatcaatgaagggg |
8796749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 38008688 - 38008774
Alignment:
| Q |
79 |
tgcttcgacacacttttacactctttgaacacttctcagacacttttatgggggttaaagatgtgtcgaagcagtgattattaatga |
165 |
Q |
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||||| |||||||||| | ||| |||| |||||||||| |||||| |||||||||||||||||||| |||| |||||| || ||||| |
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| T |
38008688 |
tgctttgacacactttaatactgtttggacacttctcaaacacttctatgggggttaaagatgtgtggaagtagtgatgatgaatga |
38008774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 47954172 - 47954258
Alignment:
| Q |
78 |
ttgcttcgacacacttttacactctttgaacacttctcagacacttttatgggggttaaagatgtgtcgaagcagtgattattaatg |
164 |
Q |
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| T |
47954172 |
ttgcttcgacacacttttacactccttagacaattctcaaacacttctaggagacttaaagatgtgtcgaaacagtgattatcaatg |
47954258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 40940327 - 40940256
Alignment:
| Q |
78 |
ttgcttcgacacacttttacactctttgaacacttctcagacacttttatgggggttaaagatgtgtcgaag |
149 |
Q |
| |
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| T |
40940327 |
ttgcttcgacacacttttacactccttagacacttatcagatacttctatggggcttagagatgagtcgaag |
40940256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 44604564 - 44604618
Alignment:
| Q |
234 |
ggtgaaaaattgtcgtattttgtttaagagcttttttgtaatgaaccaaattgct |
288 |
Q |
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| T |
44604564 |
ggtgaaaaattgtcacattttgtctaagaacttttttgtaatgtacctaattgct |
44604618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 23445074 - 23445134
Alignment:
| Q |
239 |
aaaattgtcgtattttgtttaagagcttttttgtaatgaaccaaattgcttaaattcgatg |
299 |
Q |
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||||||||| |||||||||||||| |||||||||| || ||||||||||| || ||||||| |
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| T |
23445074 |
aaaattgtcatattttgtttaagaacttttttgtagtgtaccaaattgctcaatttcgatg |
23445134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 420
Target Start/End: Original strand, 30883207 - 30883262
Alignment:
| Q |
365 |
tttaattataatcaacaaataaatatgtatgcatcggtgtcggtgtcctatatttt |
420 |
Q |
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|||||||||||| || ||||||||| |||||| ||||||||||||||||| |||| |
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| T |
30883207 |
tttaattataataaattaataaatatatatgcagcggtgtcggtgtcctatgtttt |
30883262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 33263611 - 33263525
Alignment:
| Q |
78 |
ttgcttcgacacacttttacactctttgaacacttctcagacacttttatgggggttaaagatgtgtcgaagcagtgattattaatga |
165 |
Q |
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| T |
33263611 |
ttgcttcgacacacctttacactccttagacacttctca-acatttctatgaggtttaaagatgtgttgaaatagtgattatcaatga |
33263525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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