View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_15 (Length: 536)
Name: NF19305_low_15
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 42275297 - 42274780
Alignment:
| Q |
1 |
catatttcattggtggggaaagataagatgagagtgtcatggataacggaagacaaggaaacagtaactatggttgagtatggaaccaaagcaggggagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42275297 |
catatttcattggtggggaaagataagatgagagtgtcatggataacggaagacaaggaaacagaaactatggttgagtatggaaccaaagcaggggagt |
42275198 |
T |
|
| Q |
101 |
atagtgaaaaaacaatnnnnnnncatacatcgtaccaatattttttctacaattctggaaaaatacacaatgctgtgattgggcctttggagccaaacac |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42275197 |
atagtgaaaaaacaatgggggagcatacatcgtaccaatattttttctacaattctggaaaaatacacaatgctgtgattggacctttggagccaaacac |
42275098 |
T |
|
| Q |
201 |
aacttacttctacaggtgtggaggtttgggtcctgagttttccttcaagacaccaccctctaagtttcctattgaatttgtcattgttggtaagtttctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42275097 |
aacttacttctacaggtgtggaggtttgggtcctgagttttccttcaagacaccaccctctaagtttcctattgaatttgtcattgttggtaagtttctt |
42274998 |
T |
|
| Q |
301 |
ttgcttcaaggtttggttttggtttcatattactattattgtttattggttttggagtaattatgttattgtcctattgagcttattagttagttgggtt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42274997 |
ttgcttcaaggtttggttttggtttcatattactattattgtttattggttttggag---ttatgttattgtcctattgagcttattagttagttgggtt |
42274901 |
T |
|
| Q |
401 |
tgttacttggaggtaatgactgcttcaagccaacgcaatggtcgacatggcttaagataaggttttaataattgaagggtgcgtaaagtgtacaagatca |
500 |
Q |
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| T |
42274900 |
tgttacttggaggcaatgactgcttcaagccaacgcaatggtcgacaatgcttaagataaggttttaataattgaagggtgcgtaaagtgtacaagatca |
42274801 |
T |
|
| Q |
501 |
ttagatagtcacagaacttac |
521 |
Q |
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| T |
42274800 |
ttagatagtcacagaacttac |
42274780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 26275598 - 26275701
Alignment:
| Q |
193 |
ccaaacacaacttacttctacaggtgtggaggtttgggtcctgagttttccttcaagacaccacc-ctctaagtttcctattgaatttgtcattgttggt |
291 |
Q |
| |
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|||| ||| |||||||||||||| |||||||| | |||||||||||||| ||||||||||| || ||| ||||| |||||||||||||| ||||| ||| |
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| T |
26275598 |
ccaagcactacttacttctacagatgtggaggatcaggtcctgagttttctttcaagacacctccactc-aagttgcctattgaatttgtgattgtgggt |
26275696 |
T |
|
| Q |
292 |
aagtt |
296 |
Q |
| |
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|||| |
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|
| T |
26275697 |
gagtt |
26275701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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