View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19305_low_17 (Length: 520)
Name: NF19305_low_17
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_17 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Complemental strand, 30255904 - 30255413
Alignment:
| Q |
19 |
ttatgcatattcatgcatgcttgtatattatagacatagctaacctaaactctatcctaaacatagtttctgttttgatgattaggagttaaatatgttt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30255904 |
ttatgcatattcatgcatgcttgtatattatagacatagctaacctaaactctatcctaaacatagtttctgttttgatgattaggagttaaatatgttt |
30255805 |
T |
|
| Q |
119 |
cattgttctttactcttaaatatatactatctaattagctataagattaaaaactaattaaagtagatgaaaaccacatatataattgagctaatgcact |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30255804 |
cattgttctttactcttaaatgtatactatctaattagctataagattaaaaactaattaaagtagatgaaaaccacatatataattgagctaatgcact |
30255705 |
T |
|
| Q |
219 |
aggtaggaaaaataatattttcaaatgtaaatcacttatagctacataagatcgaaaacgaattaaaaatacattgaagatgaaattttgcaccccgttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30255704 |
aggtaggaaaaataatattttcaaatgtaaatcacttatagctacataagatcgaaaacgaattaaaaatacattgaagatgaaattttgcaccccgttg |
30255605 |
T |
|
| Q |
319 |
taataagattttgattgtgtgcgtctagattgtccgatcaaaatcagacggtccgtatttcaattctgattttgatttcttttaaatttaaaatagccag |
418 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30255604 |
taataagatttagattgtgtgcgtctagattgtccgatcaaaatcagacggtccgtatttcaattctgattttgatttcttttaaatttaaaatagcgag |
30255505 |
T |
|
| Q |
419 |
cttaaaagttaaaccgtttaatcttgatcaaacagttcagaagtgactgactgcatgaggttataggattattactacacactacccctatg |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30255504 |
cttaaaagttaaaccgtttaatcttgatcaaacagttcaaaagtgactgactgcatgaggttataggattattactacacactacccctatg |
30255413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 45241751 - 45241643
Alignment:
| Q |
79 |
acatagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaatta |
178 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||||||||| || ||| || ||||||||||||||||||||| ||||| ||||| |
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| T |
45241751 |
acatagtttctgttttggtgattaggagtgaaatatttttcattgttctttacagtttaatgta---tatctaattagctataagatt-aaaacaaatta |
45241656 |
T |
|
| Q |
179 |
aagtagatgaaaa |
191 |
Q |
| |
|
||||| ||||||| |
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|
| T |
45241655 |
aagtatatgaaaa |
45241643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 42318057 - 42318165
Alignment:
| Q |
79 |
acatagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaatta |
178 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||||||||| | ||| || || |||||||||||||||||| ||||| ||||| |
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|
| T |
42318057 |
acatagtttctgttttggtgattaggagtgaaatatttttcattgttctttacagcttaatgta---taactaattagctataagatt-aaaacaaatta |
42318152 |
T |
|
| Q |
179 |
aagtagatgaaaa |
191 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
42318153 |
aagtatatgaaaa |
42318165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 42318024 - 42318062
Alignment:
| Q |
19 |
ttatgcatattcatgcatgcttgtatattatagacatag |
57 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
42318024 |
ttatgcatatgcatgcatgtttgtatattatagacatag |
42318062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 45241784 - 45241746
Alignment:
| Q |
19 |
ttatgcatattcatgcatgcttgtatattatagacatag |
57 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
45241784 |
ttatgcatatgcatgcatgtttgtatattatagacatag |
45241746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 6671452 - 6671560
Alignment:
| Q |
79 |
acatagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaatta |
178 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||||||||| || ||| || ||||||||||||||||||||| |||| ||||| |
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|
| T |
6671452 |
acatagtttctgttttggtgattaggagtgaaatatttttcattgttctttacagtttaatgta---tatctaattagctataagatt-aaaataaatta |
6671547 |
T |
|
| Q |
179 |
aagtagatgaaaa |
191 |
Q |
| |
|
||||| ||||||| |
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|
| T |
6671548 |
aagtatatgaaaa |
6671560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 6671419 - 6671457
Alignment:
| Q |
19 |
ttatgcatattcatgcatgcttgtatattatagacatag |
57 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6671419 |
ttatgcatatgcatgcatgtttgtatattatagacatag |
6671457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 31663059 - 31662959
Alignment:
| Q |
79 |
acatagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaatta |
178 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||||||||| | ||| || || |||||||||||||||||| ||||| ||||| |
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| T |
31663059 |
acatagtttctgttttggtgattaggagtgaaatatttttcattgttctttacagcttaatgta---taactaattagctataagatt-aaaacaaatta |
31662964 |
T |
|
| Q |
179 |
aagta |
183 |
Q |
| |
|
||||| |
|
|
| T |
31662963 |
aagta |
31662959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 31663092 - 31663054
Alignment:
| Q |
19 |
ttatgcatattcatgcatgcttgtatattatagacatag |
57 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
31663092 |
ttatgcatatgcatgcatgtttgtatattatagacatag |
31663054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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