View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_18 (Length: 515)
Name: NF19305_low_18
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 12 - 497
Target Start/End: Complemental strand, 27936482 - 27936000
Alignment:
| Q |
12 |
tgagatgaaattggatgaaatattaatgattcaagcttctatgcacctcgttaacaagacccgattgataaatggttgctatttattttaacagaaaaat |
111 |
Q |
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| T |
27936482 |
tgagatgaaattggatgaaatattaatgattcaagcttctatgcacctcgttaacaagacccgattgataaatggttgctatttattttaacagaaaaat |
27936383 |
T |
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| Q |
112 |
atattgagaagcctcaagcgcaatacaaggcatgcttgaatttgggaaaaatgttactataacaaaagttactacaagcaagcatgccaacactgattaa |
211 |
Q |
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| T |
27936382 |
atattgagaagcctcaagctcaatgcaaggcatgcttgaatttgagaaaaatgtta---taacaaaagttactacaagcaagcatgccaacactgattaa |
27936286 |
T |
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| Q |
212 |
atgttgttgttattttgaaaatagtagaaaagatcttaacattat--gaccatatatgtatactgaaataatatgatctagcacacatatttagtagaaa |
309 |
Q |
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| T |
27936285 |
atgttgttgttattttgaaaatagtagaaaagatcttaacattatatgaccatatatgtatactgaaataatatgatctagcacacatatttagtagaaa |
27936186 |
T |
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| Q |
310 |
cacaactaagttacatttatgactaggccaatatttaccgtatccataactatattcgactagtaaatttctcctacaccctctcttcgattgccaaagt |
409 |
Q |
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| T |
27936185 |
cacaactaagttacatttatgactaggccaatatttaccgtatccataactatattcgactagtaaatttctcctacaccctctcttcgattgccaaagt |
27936086 |
T |
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| Q |
410 |
tctaatgcttagttatgaataaacaaacttgttcccatattttgaaacattaattatgcagaaaatggaactaatgaaatgtccattc |
497 |
Q |
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| T |
27936085 |
--taatgcttagttatgaataaacaaacttgttcccatattttgaaacattaattatgcagaaaatggaactaatgtaatgtccattc |
27936000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 444
Target Start/End: Complemental strand, 43571668 - 43571598
Alignment:
| Q |
373 |
taaatttctcctacaccctctcttcgattgccaaagttctaatgcttagttatgaataaacaaacttgttcc |
444 |
Q |
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| T |
43571668 |
taaatttctcctatattgtctcttcagttgccaaa-ttcttatgcttagttatgaataaacaaacttgttcc |
43571598 |
T |
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