View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_2 (Length: 823)
Name: NF19305_low_2
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 246 - 707
Target Start/End: Original strand, 2273843 - 2274304
Alignment:
| Q |
246 |
aattaaacgtggtatctattgcttgttgaatgtgacaaaccttgtaagagtgatatgacataatataaaattgataatcgctgcagcagtatttgaaaca |
345 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
2273843 |
aattaaacgtggtatctcttgcttgttgaatgtgacaaaccttgtaagagtgatatgacataatataagattgataatcgctgcggcagtatttgaaacg |
2273942 |
T |
|
| Q |
346 |
agtctcaattctatgcttgatattacacttgatagcagcagaatgtataagattatcatggnnnnnnnnnnnnnnnnnnnnngagggttagggttagggt |
445 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
2273943 |
agtctcacttctatgcttgatattacacttgatagcaccagaatgtataagattaccatggtgttttcgttgttgtttttgagagggttagggttagggt |
2274042 |
T |
|
| Q |
446 |
tagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgttatgttgtaccat |
545 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274043 |
tagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgttatgttgtaccat |
2274142 |
T |
|
| Q |
546 |
gaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctcttaaacctctgatga |
645 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274143 |
aaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctcttaaacctctgatga |
2274242 |
T |
|
| Q |
646 |
tctttgtcgatgtatctgatcatgtacctaaatagtgagattagaaacatacattaattgag |
707 |
Q |
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| T |
2274243 |
tctttgtcgatgtctctgatcatgtacctaaatagtgagattagaaacatacattaattgag |
2274304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 428 - 707
Target Start/End: Original strand, 2272467 - 2272748
Alignment:
| Q |
428 |
gagggttagggttagggttagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagc |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272467 |
gagggttagggttagggttagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagc |
2272566 |
T |
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| Q |
528 |
aatgttatgttgtaccatgaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaact |
627 |
Q |
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| T |
2272567 |
aatgttatgttgtaccatgaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaact |
2272666 |
T |
|
| Q |
628 |
ctcttaaacctctgatgatctttgtcgatgtatctgatcatgtacctaaatagtgagattagaaac--atacattaattgag |
707 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2272667 |
ctcttaaacctctgatgatctttgtcgatgtctctcatcatgtacctaaatagtgagattagaaacatatacattaattgag |
2272748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 134 - 406
Target Start/End: Original strand, 2272170 - 2272442
Alignment:
| Q |
134 |
ttattcaaaccaaccatgagaattttttcatcccttgatcgaatgataaaaatgttaagaatgctatagtgagttgtaggaaaacaaaccaagccgatac |
233 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2272170 |
ttattcaaaccaaccatgagaatgttttcatcccttgatccaatgataaaaatgttaagaatgttatagtgagttgtaggaaaacaaaccaagccgatac |
2272269 |
T |
|
| Q |
234 |
tattaatgcccaaattaaacgtggtatctattgcttgttgaatgtgacaaaccttgtaagagtgatatgacataatataaaattgataatcgctgcagca |
333 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2272270 |
tattaatgcccaaattaaacgtggtatctcttgcttgttgaatgtgacaaaccttgtaagagtgatatgacataatataaaattgataatcgctgcggca |
2272369 |
T |
|
| Q |
334 |
gtatttgaaacaagtctcaattctatgcttgatattacacttgatagcagcagaatgtataagattatcatgg |
406 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2272370 |
gtatttgaaacaagtctcacttctatgcttgatattacacttgatagcagcagaatgtataagattaccatgg |
2272442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 432 - 640
Target Start/End: Complemental strand, 373536 - 373328
Alignment:
| Q |
432 |
gttagggttagggttagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatg |
531 |
Q |
| |
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||||||||||||||| ||||||||||||||||| || ||| | ||||||||||||||| | |||||||||||| || |||||||||||||||| || |
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| T |
373536 |
gttagggttagggtttgggacacgatgtagtgtcctaccataaccaagtgctatttgaaataagaaaacaacagcaatgagtatgagcatcacagcagtg |
373437 |
T |
|
| Q |
532 |
ttatgttgtaccatgaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctct |
631 |
Q |
| |
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| ||||| |||||||||| |||||||||||||| |||||||||||| | | |||||||||| ||||| ||||| |||| || ||||||| | | ||| |
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| T |
373436 |
tcatgttccgccatgaatttcccaaaatatgatgacatattcattgcaccgatcataatcaataccaaggataaactcattgtagtcacaactattttct |
373337 |
T |
|
| Q |
632 |
taaacctct |
640 |
Q |
| |
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||||||||| |
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| T |
373336 |
taaacctct |
373328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 2272046 - 2272105
Alignment:
| Q |
8 |
aggagcagagagagtagaatataatctccatacagatatcaattattacgaagacataac |
67 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2272046 |
aggaacagagagagtagaatataatctccatacagatatcaattattacgaaggcataac |
2272105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 294 - 403
Target Start/End: Complemental strand, 373653 - 373547
Alignment:
| Q |
294 |
agtgatatgacataatataaaattgataatcgctgcagcagtatttgaaacaagtctcaattctatgcttgatattacacttgatagcagcagaatgtat |
393 |
Q |
| |
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||||||||| || ||||||||| |||| ||||| |||| || ||||||||| ||| ||| ||||||||||||||||||||||| |||||| ||||| |
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| T |
373653 |
agtgatatggcagaatataaaagtgatgatcgc---agcattacgtgaaacaagactcgcttcaatgcttgatattacacttgataggagcagagtgtat |
373557 |
T |
|
| Q |
394 |
aagattatca |
403 |
Q |
| |
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| |||||||| |
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|
| T |
373556 |
atgattatca |
373547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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