View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19305_low_21 (Length: 436)

Name: NF19305_low_21
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19305_low_21
NF19305_low_21
[»] chr6 (2 HSPs)
chr6 (91-423)||(15345134-15345466)
chr6 (1-92)||(15345004-15345107)
[»] chr8 (3 HSPs)
chr8 (91-423)||(40504153-40504485)
chr8 (1-52)||(40504014-40504065)
chr8 (53-92)||(40504087-40504126)
[»] chr1 (3 HSPs)
chr1 (94-423)||(24706006-24706335)
chr1 (1-52)||(24706432-24706483)
chr1 (53-92)||(24706365-24706404)
[»] chr3 (2 HSPs)
chr3 (91-423)||(22107730-22108045)
chr3 (53-92)||(22108072-22108111)


Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 91 - 423
Target Start/End: Original strand, 15345134 - 15345466
Alignment:
Q  91 cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaggcacaaacgcaaatataa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15345134 cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaggcacaaacgcaaatataa 15345233  T
Q  191 accctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggagaagaacagg 290  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||      
T  15345234 accctaaaaaccttatgtatggaacatgaatcaggagttagcgctgaagaaggtaacagaacttacaagaattgaaaacggagaattggagaagaacata 15345333  T
Q  291 gagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaattgattgaa 390  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15345334 gagtttggaggccgtcgagagcgaacgtgacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctccccctactgaattgattgaa 15345433  T
Q  391 gaaggtaaagttattgaaggcaaaattcttctc 423  Q
    |||||||||||||||||||||||||||||||||    
T  15345434 gaaggtaaagttattgaaggcaaaattcttctc 15345466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 15345004 - 15345107
Alignment:
Q  1 gttttcataggataatttgtgatatacaaataattaaaacatataaccttag------------tcaattgtgttctttcacaaatttgaaattgacaaa 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||    
T  15345004 gttttcataggataatttgtgatatacaaataattaaaacatataaccttagcatttccttagctcaattgtgttctttcacaaatttgaaattgacaaa 15345103  T
Q  89 acca 92  Q
    ||||    
T  15345104 acca 15345107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 91 - 423
Target Start/End: Original strand, 40504153 - 40504485
Alignment:
Q  91 cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaggcacaaacgcaaatataa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40504153 cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacttggaattgaaaaacacaggcacaaacgcaaatataa 40504252  T
Q  191 accctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggagaagaacagg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |     
T  40504253 accctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaacttacaagaatcgaaaatggagaattggagaagaacggt 40504352  T
Q  291 gagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaattgattgaa 390  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40504353 gagtttgaaggctgtcgagagcgaacgagacgtgatacaaagagagatagagagtcgcgagcatcaataacccctttctcaccctactgaattgattgaa 40504452  T
Q  391 gaaggtaaagttattgaaggcaaaattcttctc 423  Q
    ||||||||||| |||||| ||||||||||||||    
T  40504453 gaaggtaaagtgattgaatgcaaaattcttctc 40504485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40504014 - 40504065
Alignment:
Q  1 gttttcataggataatttgtgatatacaaataattaaaacatataaccttag 52  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40504014 gttttcataggataatttgtgatatagaaataattaaaacatataaccttag 40504065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 40504087 - 40504126
Alignment:
Q  53 tcaattgtgttctttcacaaatttgaaattgacaaaacca 92  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40504087 tcaattgtgttctttcacaaatttgaaattgacaaaacca 40504126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 94 - 423
Target Start/End: Complemental strand, 24706335 - 24706006
Alignment:
Q  94 catcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaggcacaaacgcaaatataaacc 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24706335 catcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaagcacaaacgcaaatataaacc 24706236  T
Q  194 ctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggagaagaacagggag 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||    
T  24706235 ctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacaaaacttacaagaatcgaaaacagagaattggagaagaacagagag 24706136  T
Q  294 tttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaattgattgaagaa 393  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24706135 tttgaaggccgtcgagagcgaacgagacgtgagacaaagagagatagagagtcgcgagcatcaataacccctttttcaccctactgaattgattgaagaa 24706036  T
Q  394 ggtaaagttattgaaggcaaaattcttctc 423  Q
    |||||||| ||||| |||||||||||||||    
T  24706035 ggtaaagtgattgatggcaaaattcttctc 24706006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24706483 - 24706432
Alignment:
Q  1 gttttcataggataatttgtgatatacaaataattaaaacatataaccttag 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24706483 gttttcataggataatttgtgatatacaaataattaaaacatataaccttag 24706432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 24706404 - 24706365
Alignment:
Q  53 tcaattgtgttctttcacaaatttgaaattgacaaaacca 92  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24706404 tcaattgtgttctttcacaaatttgaaattgacaaaacca 24706365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 91 - 423
Target Start/End: Complemental strand, 22108045 - 22107730
Alignment:
Q  91 cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaggcacaaacgcaaatataa 190  Q
    |||||||||| |||||||||||  ||||| ||| ||||||||||||| |||||         ||||||||||||||||| |||||||||| |||||||||    
T  22108045 cagcatcaaacattgaacaagcctaatttaaatcgacattgaacattaaacacg--------catggaattgaaaaacataggcacaaacacaaatataa 22107954  T
Q  191 accctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggagaagaacagg 290  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||      
T  22107953 accctaataaccttttgtatggaatatgaatcaggagttagcgttgaagaaggtgacataacttacaagaatcgaaaacggagaattggagaagaacaaa 22107854  T
Q  291 gagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaattgattgaa 390  Q
    ||||||| |||||| |||||||||||||||||||| ||||| |||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  22107853 gagtttgaaggccgacgagagcgaacgagacgtgagacaaaaagagata---------gagcatcaataacccctttctcaccctactgaattgattgaa 22107763  T
Q  391 gaaggtaaagttattgaaggcaaaattcttctc 423  Q
    ||||||||||| ||||||||| |||||||||||    
T  22107762 gaaggtaaagtgattgaaggcgaaattcttctc 22107730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 22108111 - 22108072
Alignment:
Q  53 tcaattgtgttctttcacaaatttgaaattgacaaaacca 92  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22108111 tcaattgtgttctttcacaaatttgaaattgacaaaacca 22108072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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