View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19305_low_26 (Length: 387)
Name: NF19305_low_26
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_26 |
 | |
|
| [»] scaffold1211 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1211 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 377
Target Start/End: Complemental strand, 1649 - 1286
Alignment:
| Q |
14 |
cagaacccatatgatttgcattattcaataattctcctatcatcaactatcaaatgttgcaaaatccctgtttcaatttttgtttcattaataaccaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1649 |
cagaacccatatgatttgcattattcaataattctcctatcatcaactatcaaatgttgcaaaatccctgtttcaatttttgtttcattaataaccaaat |
1550 |
T |
|
| Q |
114 |
tgtgaagaaatataaactgaagttactcgaccactattccataataacttcaaatctgaattagaacatcttgatcttttgtggtttggatctaccaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1549 |
tgtgaagaaatataaactgaagttactcgaccactattccataataacttcaaatctgaattagaacatcttgatcttttgtggtttggatctaccaaat |
1450 |
T |
|
| Q |
214 |
tacatttaacttaacatttaaagttctctgattggaaacagtgattaggatttaggacactaatattatattaaagccattcagcttacaagctctagga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1449 |
tacatttaacttaacatttaaagttctctgattggaaacagtgattaggatttaggacactaatattatattaaagccattcagcttacaagctctagga |
1350 |
T |
|
| Q |
314 |
tgacagcttaacattggattgaatctctagttttgagtatggctcatacttgcccgtagtatta |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1349 |
tgacagcttaacattggattgaatctctagttttgagtatggctcatacttgcccgtagtatta |
1286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 26377735 - 26377672
Alignment:
| Q |
305 |
gctctaggatgacagcttaacattggattgaatctctagttttgagtatggctcatacttgccc |
368 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26377735 |
gctctaggatgacagcttaacattggtttgaatctctagtgttgagtatggctcatacttgccc |
26377672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 26377925 - 26377851
Alignment:
| Q |
105 |
taaccaaattgtgaagaaatataaactgaagttactcgaccactattccataataacttcaaatctgaattagaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| | ||| || || |||||||||||||||||||| |
|
|
| T |
26377925 |
taaccaaattgtgaagaaatataaactgaagttactcaaccattcttctatgatgacttcaaatctgaattagaa |
26377851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 26377788 - 26377746
Alignment:
| Q |
265 |
ttaggacactaatattatattaaagccattcagcttacaagctc |
308 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
26377788 |
ttaggacactaatagt-tattaaagccattcagcttacaagctc |
26377746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University