View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_27 (Length: 381)
Name: NF19305_low_27
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 30371193 - 30370838
Alignment:
| Q |
16 |
cagttacaaatccagattcatcactagccaaaaacagagcagcctgtgcgacatcatcagttgttgcacctctccctttaagcaaacttgcattcatccc |
115 |
Q |
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| T |
30371193 |
cagttacaaatccagattcatcactagccaaaaacagagcagcctgtgcgacatcatcagttgttgcacctctccctttaagcaaacttgcattcatccc |
30371094 |
T |
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| Q |
116 |
aataaactcactcaattgttcactagtcatatcaacttcaccataacatctaaaagcattcaaaagcatcttagaaggaacgccgtgcggagaaacacaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30371093 |
aataaactcactcaattgttcactagtcatatcaacttcaccataacatctaaaagcattcaaaagcatctcagaaggaacgccgtgcggagaaacacaa |
30370994 |
T |
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| Q |
216 |
ttaacgcgaatcaaatgaacacctaattcgcacgctgcacttctcattaatccatccatagctgattttgacattgtatagccatgtgaagcaaatccac |
315 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30370993 |
ttaacgcgaatcaaatgaacacctaattcgcacgccgcacttctcattaatccatccatagctgattttgacattgtatagccatgtgaagcaaatccac |
30370894 |
T |
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| Q |
316 |
ctatagttgcagctgcacttgaagtacaaataattgatcctccttttttacctttg |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30370893 |
ctatagttgcagctgcacttgaagtacaaataattgatcctccttttttacctttg |
30370838 |
T |
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