View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19305_low_28 (Length: 377)
Name: NF19305_low_28
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 22773477 - 22773836
Alignment:
| Q |
1 |
actctaatgctcaaaaacaaatctgaatcaaaaccaacaaatggcggatataatctcatgaatgtatgacataatactgatccaaattatcatgcatatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
22773477 |
actctaatgctcaaaaacaaatctgaatcaaaaccaacaaatggcagatataatctcatgaatggatgacataatactgatccaaattatcatgcatatc |
22773576 |
T |
|
| Q |
101 |
ttcttctaatctacctcataaaaaacagaaaaactatattacttcnnnnnnnnnnnnnnntatccatatggcaggattatatattaaaataaacaggaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22773577 |
ttcttctaatctacctcataaaaaacagaaaaactatattacttccacacacaccacacatatccatatggcaggattatatattaaaataaacaggaga |
22773676 |
T |
|
| Q |
201 |
aacttaacttagttcaaaactagttataacactcactcatagatcagaaccttaagaatgtgaggtgccacaaacatttaattcagatgacgcagtagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22773677 |
aacttaacttagttcaaaactagttataacactcactcatagatcagaaccttaagaatgtgaggtgccacaaacatttaattcagatgacgcagtagtg |
22773776 |
T |
|
| Q |
301 |
aacataaaccaaacttttaactaaaatgatactcatacaaaattaattctaaaacatatg |
360 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22773777 |
aacataaaccaaacttttaaataaaatgatactcatacaaaattaattctaaaacatatg |
22773836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 26081656 - 26081972
Alignment:
| Q |
1 |
actctaatgctcaaaaacaaatctgaatcaaaaccaacaaatggcggatataatctcatgaatgtatgacataatactgatccaaattatcatgcatatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
26081656 |
actctaatgctcaaaaacaaatctgaatcaaaaccaacaaatggcagatataatctcatgaatggatgacataatactgatccaaattataatgcatatc |
26081755 |
T |
|
| Q |
101 |
ttcttctaatctacctcataaaaaacagaaaaactatattacttcnnnnnnnnnnnnnnntatccatatggcaggattatatattaaaataaacaggaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26081756 |
ttcttctaatctacctcataaaaaacagaaaaactatattacttccacacacaccacacatatccatatggcaggattatatattaaaataaacaggaga |
26081855 |
T |
|
| Q |
201 |
aacttaacttagttcaaaactagttataacactcactcatagatcagaaccttaagaatgtgaggtgccacaaacatttaattcagatgacgcagtagtg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
26081856 |
aacttaacttagttcaaaactagttataacactcactcatagatcagaaccttaagaatgtgaggtgccacaaacatttaatttagatgacgcagtagtg |
26081955 |
T |
|
| Q |
301 |
aacataaaccaaacttt |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
26081956 |
aacataaaccaaacttt |
26081972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 40 - 335
Target Start/End: Original strand, 15856188 - 15856483
Alignment:
| Q |
40 |
aatggcggatataatctcatgaatgtatgacataatactgatccaaattatcatgcatatcttcttctaatctacctcataaaaaacagaaaaactatat |
139 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15856188 |
aatggcagatataatctcatgaatggatgacataatactgatccaaattatcatgcatatcttcttctaatctacctcataaaaaacagaaaaactatat |
15856287 |
T |
|
| Q |
140 |
tacttcnnnnnnnnnnnnnnntatccatatggcaggattatatattaaaataaacaggagaaacttaacttagttcaaaactagttataacactcactca |
239 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15856288 |
tacttccacacacaccacacatatccatatggcaggattatatattaaaataaacaggagaaacttaacttagttcaaaactagttataacactcactca |
15856387 |
T |
|
| Q |
240 |
tagatcagaaccttaagaatgtgaggtgccacaaacatttaattcagatgacgcagtagtgaacataaaccaaacttttaactaaaatgatactca |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
15856388 |
tagatcagaaccttaagaatgtgaggtgccacaaacatttaattcagatgacgcagtagttaacataaaccaaacttttaattaaaatgatactca |
15856483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 204 - 360
Target Start/End: Original strand, 51269959 - 51270114
Alignment:
| Q |
204 |
ttaacttagttcaaaactagttataacactcactcatagatcagaaccttaagaatgtgaggtgccacaaacatttaattcagatgacgcagtagtgaac |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51269959 |
ttaacttagttcaaaactagttataacactcactcatagatcagaaccttaagaatgtgaggtgccacaaacatttaattcagatgacgcagtagtgaac |
51270058 |
T |
|
| Q |
304 |
ataaaccaaacttttaactaaaatgatactcatacaaaattaattctaaaacatatg |
360 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51270059 |
ataaacc-aacttttaactaaaatgatactcatacaaaattaattctaaaacatatg |
51270114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 51269792 - 51269936
Alignment:
| Q |
1 |
actctaatgctcaaaaacaaatctgaatcaaaaccaacaaatggcggatataatctcatgaatgtatgacataatactgatccaaattatcatgcatatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51269792 |
actctaatgctcaaaaacaaatctgaatcaaaaccaacaaatggcagatataatctcatgaatggatgacataatactgatccaaattatcatgcatatc |
51269891 |
T |
|
| Q |
101 |
ttcttctaatctacctcataaaaaacagaaaaactatattacttc |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51269892 |
ttcttctaatctacctcataaaaaacagaaaaactatattacttc |
51269936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 52476485 - 52476544
Alignment:
| Q |
301 |
aacataaaccaaacttttaactaaaatgatactcatacaaaattaattctaaaacatatg |
360 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52476485 |
aacataaaccaaacttttaattaaaatgatactcatacaaaattaattctaaaacatatg |
52476544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 40067666 - 40067435
Alignment:
| Q |
1 |
actctaatgctcaaaaacaaatctgaatcaaaaccaacaaatggcggatataatctcatgaatgtatgacataatactgatccaaattatcatgcatatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40067666 |
actctaatgctcaaaaacaaatctgaatcaaaaccaacaaatggcagatataatctcatgaatggatgacataatactgatccaaattatgatgcatatc |
40067567 |
T |
|
| Q |
101 |
ttcttctaatctacctcataaaaaacagaaaaactatattacttcnnnnnnnnnnnnnnntatccatatggcaggattatatattaaaataaacaggaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40067566 |
ttcttctaatctacctcataaaaaacagaaaaactatattacttccacacacaccacacatatccatatggcaggattatatattaaaataaacaggaga |
40067467 |
T |
|
| Q |
201 |
aacttaacttagttcaaaactagttataacac |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40067466 |
aacttaacttagttcaaaactagttataacac |
40067435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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