View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_3 (Length: 769)
Name: NF19305_low_3
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 412 - 758
Target Start/End: Complemental strand, 35744757 - 35744411
Alignment:
| Q |
412 |
gaaagtgatataacaaaagtgacatcaatgtaaaatgtgattggattcgaggcctgcataaaagtgcatactcgttaaaaatgcaataattatctcctcc |
511 |
Q |
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| T |
35744757 |
gaaagtgatataacaaaagtgacatcaatgtaaaatgtgattggattcgaggcctgcataaaagtgcatactcgttaaaaatgcaataattatctcctcc |
35744658 |
T |
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| Q |
512 |
tgcgttgcatgggttaaaatactagtttgtcagttttcaagcaatttgatttgttgtgcaggtgaaactttgctggtgactctagattatttgatgaagt |
611 |
Q |
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| T |
35744657 |
tgcgttgcattggttaaaatactagtttgtcagttttcaagcaatttgatttgttgtgcaggtgaaactttgctggtgactctagattatttgatgaagt |
35744558 |
T |
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| Q |
612 |
tagcaagtgagagatttgacatagaagaagatgaacaaaagaaagaattcagtccaaagtcaagttcatttggaaaattcgtagcgagaacctcttcatt |
711 |
Q |
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| T |
35744557 |
tagcaagtgagagatttgacatagaagaagatgaacaaaagaaagaattcagtccaaagtcaagttcatttggaaaattcgtagcgagaacctcttcatt |
35744458 |
T |
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| Q |
712 |
ttcagatagtagctgctcatctcctctaacacctagatctgtgctcc |
758 |
Q |
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| T |
35744457 |
ttcagatagtagctgctcatctcctctaacacctagatctgtgctcc |
35744411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 35745140 - 35744796
Alignment:
| Q |
20 |
cagagatcataacaaaaactcaactgtcaaagattgaggacaagtctattgatcaggtaattatagtttcaacattaaataagctgcacctgaaatgaaa |
119 |
Q |
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| T |
35745140 |
cagagatcataacaaaaactcaagtgtcaaagattgaggacaagtctattgatcaggtaattatagtttcaacattaaataagctgcacctgaaatgaaa |
35745041 |
T |
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| Q |
120 |
ttattctaattatgataattactgaaatcttagcatcctgaaaatctaaatgtggacatttattttatactaggctgtggcctacttctgtgaggctttg |
219 |
Q |
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| T |
35745040 |
ttattctaattatgataattactgaaatcttagcatcctgaaaatctaaatgtggacatttattttatactaggctgtggcctacttctgtgaggctttg |
35744941 |
T |
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| Q |
220 |
aagtctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttccaacatgcaaggatgacaacaacatgcgtcaattgg |
319 |
Q |
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| T |
35744940 |
aagtctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttccaacatgcaaggatgacaacaacatgcgtcaattgg |
35744841 |
T |
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| Q |
320 |
gtatgttactaatgatcttagatatgcatcaacaatgtaaaaacttctt |
368 |
Q |
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| T |
35744840 |
gtatgttattaatgatct----tatgcatcaacaatgtaaaaacttctt |
35744796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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