View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_32 (Length: 352)
Name: NF19305_low_32
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 42215389 - 42215052
Alignment:
| Q |
1 |
attttgacactctgaaagactatttgggatttttcctgttagcttgttcttccatgcaaagaagagagtcaagcctctcaagttgccaataacagaagga |
100 |
Q |
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| T |
42215389 |
attttgacactctgaaagactatttgggatttttcctgttagcttgttcttccatgcaaagaagagagtcaagtttctcaagttgccaataacagaagga |
42215290 |
T |
|
| Q |
101 |
atctcaccagtaatagcattgttgtcaacttccagctgaatcaaagaactgcagtttgaaatttcaggtggtataatacctgacaactgattaacactca |
200 |
Q |
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| T |
42215289 |
atctcaccagtaatagcattgttgtcaacttccagctgaatcaaagaactgcagtttgaaatttcaggtggtataatacctgacaactgattaacactca |
42215190 |
T |
|
| Q |
201 |
gttgaagtccttgcagatttgatagctttccaaaactgattggtatgctacctgtgagaagattttctgacaaatctatctcactgagctctctgcagtt |
300 |
Q |
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| T |
42215189 |
gttgaagtccttgcagatttgatagctttccaaaactgattggtatgctacctgtgagaagattttctgacaaatctatctcactgagctctctgcagtt |
42215090 |
T |
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| Q |
301 |
tccaagctcttctggaattgctcctaccatattgtttt |
338 |
Q |
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| T |
42215089 |
tccaagctcttctggaattgctcctaccatattgtttt |
42215052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 24156807 - 24156532
Alignment:
| Q |
4 |
ttgacactctgaaagactatttgggatttttcctgttagcttgttcttccatgcaaagaagagagtcaagcctctcaagttgccaataacagaaggaatc |
103 |
Q |
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| T |
24156807 |
ttgacaatctgaaagactatctgggatttttcctgttaacttgttctgccatgcaaagaacaaattcaagtttctcaaattgccaataagaggaggaatc |
24156708 |
T |
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| Q |
104 |
tcaccagtaatagcattgttgtcaacttccagctgaatcaaagaactgcagtttgaaatttcaggtggtataatacctgacaactgattaacactcagtt |
203 |
Q |
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|||||||| | |||||||||||||| ||| || ||| |||||||| |||| | |||||| ||||| ||||| |||||||| | ||||| ||||||| || |
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| T |
24156707 |
tcaccagtgagagcattgttgtcaatttcaagttgagtcaaagaagtgcaatgtgaaatctcaggaggtatgatacctgagagatgattgacactcaatt |
24156608 |
T |
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| Q |
204 |
gaagtccttgcagatttgatagctttccaaaactgattggtatgctacctgtgagaagattttctgacaaatctat |
279 |
Q |
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|||| |||| |||||||| |||| || | | | | |||||||||||||| | |||||||||||| |||||||| |
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| T |
24156607 |
gaagctcttgaagatttgaaagctcgccgagaatcttcggtatgctacctgttaaaagattttctgaaaaatctat |
24156532 |
T |
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