View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_36 (Length: 336)
Name: NF19305_low_36
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 33277297 - 33276992
Alignment:
| Q |
15 |
atgagaaacgatggtggctacgaagtgattaaaaaagcaattggtaacttagagaagagacacaaagagcacattgctgcttatggagaaggcaatgagc |
114 |
Q |
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| T |
33277297 |
atgagaaataatggtggctacgaagtgattaaaaaagcaattggtaatttagagaagagacacaaagagcacattgctgcttatggagaaggcaatgagc |
33277198 |
T |
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| Q |
115 |
gtcgtttgactggacgtcatgaaactgctgacatcaacaccttcaaatgggtaaccaaaaaatattcattacctttgcaatatttttctttgattagttt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33277197 |
gtcgtttgactggacgtcatgaaactgctgacatcaacaccttcaaatgggtaaccaaaaaatattcattacctttgcaatatttttttttgattagttt |
33277098 |
T |
|
| Q |
215 |
tttatgcatcatataaaagcttatgcatcaagttttgtcacaattagagagaaaatagaataaactttgtgtaagttctacataagaaattttataagtt |
314 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |
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| T |
33277097 |
tttatgcatcatataaaagcttatgcatcaagtttagtcacaattagagagaaaatagaataaactctgtataagttctacatgagaaattttataagtt |
33276998 |
T |
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| Q |
315 |
aataaa |
320 |
Q |
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|||||| |
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| T |
33276997 |
aataaa |
33276992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 29441375 - 29441272
Alignment:
| Q |
75 |
cacaaagagcacattgctgcttatggagaaggcaatgagcgtcgtttgactggacgtcatgaaactgctgacatcaacaccttcaaatgggtaaccaaaa |
174 |
Q |
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| T |
29441375 |
cacaaggagcacattgctgcttatggagaaggcaacgagcgtaggttgacagggcgacatgagacggctgacattaacaccttcttatgggtaagcaaat |
29441276 |
T |
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| Q |
175 |
aata |
178 |
Q |
| |
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|||| |
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| T |
29441275 |
aata |
29441272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 26247849 - 26247776
Alignment:
| Q |
84 |
cacattgctgcttatggagaaggcaatgagcgtcgtttgactggacgtcatgaaactgctgacatcaacacctt |
157 |
Q |
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||||||||||| ||||||||||| |||||| | ||| | |||||| |||||||| || |||||||||||||| |
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| T |
26247849 |
cacattgctgcctatggagaaggaaatgagagacgtctcactggaaaacatgaaacagcagacatcaacacctt |
26247776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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