View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19305_low_37 (Length: 333)
Name: NF19305_low_37
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 48 - 314
Target Start/End: Original strand, 49509201 - 49509467
Alignment:
| Q |
48 |
taaatcacaagaacgtgttaataaattttcttttgcaaaggcgtatgtgctaattaattggaaagtgtcaattcaatggtaagaatttgatcatgtaatc |
147 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49509201 |
taaatcacaagaatgtgttaataaattttcttttgcaaaggcgtatgtgctaattaattggaaagtgtcaattcaatggtaagaatttgatcatgtaatc |
49509300 |
T |
|
| Q |
148 |
tcaatgaacgaagtaagttcaaatatcttcgggaacagttgtaaaatagttagcagtgtcactaataaatgtaaatagaaacagatgatatatatgttgg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49509301 |
tcaatgaacgaagtaagttcaaatatcttcgggaacagttgtaaaatagttagcagtgtcactaataaatgtaaatagaaacagatgatatttatgttgg |
49509400 |
T |
|
| Q |
248 |
atcccttacctatcatcattttggcatgaacatatatcatgaatcttctagaattttgtgctctact |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49509401 |
atcccttacctatcatcattttggcatgaacatatatcatgaatcttctagaattttgtgctctact |
49509467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 49520551 - 49520611
Alignment:
| Q |
252 |
cttacctatcatcattttggcatgaacatatatcatgaatcttctagaattttgtgctcta |
312 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
49520551 |
cttacctatcatcatcttggaatgaacatagatcatgaatcttctagacttttgtgctcta |
49520611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 2415896 - 2415934
Alignment:
| Q |
252 |
cttacctatcatcattttggcatgaacatatatcatgaa |
290 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
2415896 |
cttacctatcatcatcttggtatgaacatatatcatgaa |
2415934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 44663162 - 44663124
Alignment:
| Q |
252 |
cttacctatcatcattttggcatgaacatatatcatgaa |
290 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
44663162 |
cttacctatcatcatcttggcatgaacatagatcatgaa |
44663124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University