View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19305_low_39 (Length: 322)
Name: NF19305_low_39
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_39 |
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| [»] scaffold0135 (7 HSPs) |
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| [»] scaffold0753 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 9275552 - 9275246
Alignment:
| Q |
1 |
aattcattaatgaataactttatgaataattcaatatttcattgaagtgctttggatctctagaaagttgtggaaggtaaaattaaaggcaaaggcatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9275552 |
aattcattaatgaataactttatgaataattcaatatttcattgaagtgctttggatctctagaaagttgtggaaggtaaaattaaaggcaaaggcatgt |
9275453 |
T |
|
| Q |
101 |
gtgttttatcgtgttttaaaaaccatcctcaccagaatcatgattttgnnnnnnncaaaagcaatttgagtttgcataaagaaataatatgtaggggatg |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9275452 |
gtgttttatcgtgttttaaaaaccatcttcaccagaatcatgattttgaaaaaaacaaaagcaatttgagtttgcataaagaaataatatgtaggggatg |
9275353 |
T |
|
| Q |
201 |
agaggatatgtagcatgcatgtgaatttgagtttgcataattgaaattgaagcacaattcccttctgtaacatgtatccctcttaaccctacgatctcaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9275352 |
agaggatatgtagcatgcatgtgaatttgagtttgcataattgaaattgaagcacaattcccttctgtaacatgtatccctcttaaccctatgatctcaa |
9275253 |
T |
|
| Q |
301 |
ttgtttt |
307 |
Q |
| |
|
||||||| |
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|
| T |
9275252 |
ttgtttt |
9275246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 9204142 - 9204108
Alignment:
| Q |
4 |
tcattaatgaataactttatgaataattcaatatt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
9204142 |
tcattaatgaataactttatgaataattcaatatt |
9204108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 9208361 - 9208327
Alignment:
| Q |
4 |
tcattaatgaataactttatgaataattcaatatt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
9208361 |
tcattaatgaataactttatgaataattcaatatt |
9208327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 2225 - 2191
Alignment:
| Q |
4 |
tcattaatgaataactttatgaataattcaatatt |
38 |
Q |
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|
||||||||||||||||||||||||||||||||||| |
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| T |
2225 |
tcattaatgaataactttatgaataattcaatatt |
2191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 6440 - 6406
Alignment:
| Q |
4 |
tcattaatgaataactttatgaataattcaatatt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6440 |
tcattaatgaataactttatgaataattcaatatt |
6406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 10655 - 10621
Alignment:
| Q |
4 |
tcattaatgaataactttatgaataattcaatatt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
10655 |
tcattaatgaataactttatgaataattcaatatt |
10621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 14870 - 14836
Alignment:
| Q |
4 |
tcattaatgaataactttatgaataattcaatatt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
14870 |
tcattaatgaataactttatgaataattcaatatt |
14836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 19085 - 19051
Alignment:
| Q |
4 |
tcattaatgaataactttatgaataattcaatatt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
19085 |
tcattaatgaataactttatgaataattcaatatt |
19051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 23300 - 23266
Alignment:
| Q |
4 |
tcattaatgaataactttatgaataattcaatatt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
23300 |
tcattaatgaataactttatgaataattcaatatt |
23266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 27515 - 27481
Alignment:
| Q |
4 |
tcattaatgaataactttatgaataattcaatatt |
38 |
Q |
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|
||||||||||||||||||||||||||||||||||| |
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| T |
27515 |
tcattaatgaataactttatgaataattcaatatt |
27481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0753
Description:
Target: scaffold0753; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 973 - 1006
Alignment:
| Q |
6 |
attaatgaataactttatgaataattcaatattt |
39 |
Q |
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|
|||||||||||||||||||||||||| ||||||| |
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| T |
973 |
attaatgaataactttatgaataatttaatattt |
1006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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