View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_40 (Length: 317)
Name: NF19305_low_40
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 24561412 - 24561702
Alignment:
| Q |
16 |
acttcaaacaataagagattaggatatcaatacagtctcaaggctaaatatattgcagatcctttgttagtcttcctttatcggccacaacaaaacaacc |
115 |
Q |
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| T |
24561412 |
acttcaaacaataagagattaggatatcaatacagtctcaaggctaattatattgcagatcctttgttagtcttcctttatcggccacaacaaaacaacc |
24561511 |
T |
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| Q |
116 |
tcaatgaaaagcaagactgcacaataatactccaaatcaaatacatgagttgcttattcatgaagcaactacaataaagattttaagggtaaccaattac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24561512 |
tcaatgaaaagcaagactgcacaataatactccaaatcaaatacatgagttgcttattcatgaagcaactacaataaagattttaagggtaaccaattgc |
24561611 |
T |
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| Q |
216 |
ggattttgattctcaaatatcaaatggtgatgcagttcaaatgctttcaataggatatctcttaaaccaatggtagtctcttcatctcact |
306 |
Q |
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| T |
24561612 |
ggattttgattctcaaatatcaaatggtgatgcagttcaaatgctttcaataggatatctcttaaaccaatggtagtctcttcatcacact |
24561702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 37223886 - 37223647
Alignment:
| Q |
19 |
tcaaacaataagagattaggatatcaatacagtctcaaggctaaatatattgcagatcctttgttagtcttcctttatcggccacaacaaaacaacctca |
118 |
Q |
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||||||||||||||| || ||||| |||||||| ||||| ||||||||| ||| |||||||||||| | || |||||| ||||| |||||||||| ||| |
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| T |
37223886 |
tcaaacaataagagactatgatatgaatacagtgtcaagactaaatatactgctgatcctttgttactttttctttattggccataacaaaacaatgtca |
37223787 |
T |
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| Q |
119 |
atgaaaagcaagactgcacaataatactccaaatcaaatacatgagttgcttattcatgaagcaactacaataaagattttaagggtaaccaattacgga |
218 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||| |
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| T |
37223786 |
atgaagagcaagactgcacaataatactccaaatcaaatacataagttgcttatttatgaagcaacaacaataaagattttaaaggtaaccaattgtgga |
37223687 |
T |
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| Q |
219 |
ttttgattctcaaatatcaaatggtgatgcagttcaaatg |
258 |
Q |
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| T |
37223686 |
ttttgattctcaaatatcaaatggtgacatagttcaaatg |
37223647 |
T |
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