View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_44 (Length: 298)
Name: NF19305_low_44
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_44 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 298
Target Start/End: Original strand, 2188337 - 2188625
Alignment:
| Q |
10 |
tccaagaatatgaggtagtttatagtttacctaaggtggccacatcttcaaatattggtagaaatattaaattgcattgaataaattatcattaatgaaa |
109 |
Q |
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| T |
2188337 |
tccaagcaaatgaggtagtttatagtttatctaaggtggccacatcttcaaacattggtagaaataccaaattgcattgaataaattatcattaatgaaa |
2188436 |
T |
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| Q |
110 |
tgttataagtttctaccttnnnnnnnntagtgttaaatgagtgtttgagaattatagatgttcaaatataagggttgtttatttaataaacaatgaaggt |
209 |
Q |
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| T |
2188437 |
tgttataagtttctaacttaaaaaaaataatgttaaatgagtgtttgagaattatagatgttgaaatataagggttgtttatttaataaacaatgaaggt |
2188536 |
T |
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| Q |
210 |
ttttgctttgtgagaaaatagaaggacatgaattacatttgtaagggtggtaggcatatttttctttatttttaatgatgtgattttta |
298 |
Q |
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| T |
2188537 |
ttttgctttgtgagaaaatagaaggacatgaattacatttgtaagggtggtaggcatatttttctttatttttaatgatgtgattttta |
2188625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 3147729 - 3147688
Alignment:
| Q |
145 |
aatgagtgtttgagaattatagatgttcaaatataagggttg |
186 |
Q |
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| T |
3147729 |
aatgagtgtttgagaattatggatgtgcgaatataagggttg |
3147688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 15634278 - 15634329
Alignment:
| Q |
139 |
gtgttaaatgagtgtttgagaattatagatgttcaaatataagggttgttta |
190 |
Q |
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| T |
15634278 |
gtgttgaatgagtgtttgagaataattgatgttcaaatataagggtggttta |
15634329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 18481985 - 18481938
Alignment:
| Q |
138 |
agtgttaaatgagtgtttgagaattatagatgttcaaatataagggtt |
185 |
Q |
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| T |
18481985 |
agtgttgaatgagtgtttgagaattataggtgtctaaatataagggtt |
18481938 |
T |
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