View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19305_low_46 (Length: 289)
Name: NF19305_low_46
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 5172873 - 5173130
Alignment:
| Q |
19 |
ctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtata |
118 |
Q |
| |
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||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||| ||| |
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| T |
5172873 |
ctcacatccttgacattcttatcactctatgaaaattacatgcaaggatcattttcacttatcattttggctaatcactccaatcttcagcatctacata |
5172972 |
T |
|
| Q |
119 |
tttcatcgaaaaacagcactggagtacacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaactt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| | |
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|
| T |
5172973 |
tttcatcgaaaaacagcactggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacct |
5173072 |
T |
|
| Q |
219 |
aaacaaggacaaaggaagtgtcattcctacttttctttcatatcaatataatttgata |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5173073 |
aaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgata |
5173130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 5159957 - 5160213
Alignment:
| Q |
19 |
ctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtata |
118 |
Q |
| |
|
|||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |
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|
| T |
5159957 |
ctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatata |
5160056 |
T |
|
| Q |
119 |
tttcatcgaaaaacagcactggagtacacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaactt |
218 |
Q |
| |
|
||||||| ||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |
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|
| T |
5160057 |
tttcatcaaaaaacaatattggagtagacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacct |
5160156 |
T |
|
| Q |
219 |
aaacaaggacaaaggaagtgtcattcctacttttctttcatatcaatataatttgat |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
5160157 |
aaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatacaatttgat |
5160213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 5195599 - 5195853
Alignment:
| Q |
19 |
ctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtata |
118 |
Q |
| |
|
|||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |
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|
| T |
5195599 |
ctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatata |
5195698 |
T |
|
| Q |
119 |
tttcatcgaaaaacagcactggagtacacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaactt |
218 |
Q |
| |
|
||||||| ||||||| | ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| || || |||||||||| | |
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|
| T |
5195699 |
tttcatcaaaaaacaatattggagtagacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcacttattgttagaaattgcaacct |
5195798 |
T |
|
| Q |
219 |
aaacaaggacaaaggaagtgtcattcctacttttctttcatatcaatataatttg |
273 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5195799 |
aaacaaggacgaaggaagtgtcattcctacttttctttcatatcaatataatttg |
5195853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 5182205 - 5182464
Alignment:
| Q |
19 |
ctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtata |
118 |
Q |
| |
|
|||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
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|
| T |
5182205 |
ctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcactcaaatcttcagcatctatata |
5182304 |
T |
|
| Q |
119 |
tttcatcgaaaaacagcactggagtacacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaactt |
218 |
Q |
| |
|
||||| || ||||||| |||||| | |||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||| |||||||||| | |
|
|
| T |
5182305 |
tttcaccggaaaacag---tggagttctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacct |
5182401 |
T |
|
| Q |
219 |
aaacaaggacaaaggaagtgtcattcctacttttctttcatatcaatataatttgatattctt |
281 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5182402 |
aaacaaggagaaaggaggtgtcattcctacttttctttcatatcaatataatttgatattctt |
5182464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 4842652 - 4842395
Alignment:
| Q |
19 |
ctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtata |
118 |
Q |
| |
|
||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||| |||| |
|
|
| T |
4842652 |
ctcacatccttgacattcttatcactctatgaaaattacatgcaaggatcattttcacttatcaatttggctaatcactccaatcttcagcatctatata |
4842553 |
T |
|
| Q |
119 |
tttcatcgaaaaacagcactggagtacacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaactt |
218 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| | |
|
|
| T |
4842552 |
tttcatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacct |
4842453 |
T |
|
| Q |
219 |
aaacaaggacaaaggaagtgtcattcctacttttctttcatatcaatataatttgata |
276 |
Q |
| |
|
||||| | | ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4842452 |
aaacatgaagaaaggaagtgtcattcctacttttctttcttatcaatataatttgata |
4842395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 38 - 281
Target Start/End: Complemental strand, 4857107 - 4856867
Alignment:
| Q |
38 |
tatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtatatttcatcgaaaaacagcac |
137 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||| || ||||||| |
|
|
| T |
4857107 |
tatccatctatggaaattacatgcaaggatcattttcattgaccactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacag--- |
4857011 |
T |
|
| Q |
138 |
tggagtacacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaacttaaacaaggacaaaggaagt |
237 |
Q |
| |
|
|||||| | |||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||| |||||||||| |||||| |||| |||||||| |
|
|
| T |
4857010 |
tggagttctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacatggacgaaggaagt |
4856911 |
T |
|
| Q |
238 |
gtcattcctacttttctttcatatcaatataatttgatattctt |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4856910 |
gtcattcctacttttctttcatatcaatataatttggtattctt |
4856867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 5213765 - 5214021
Alignment:
| Q |
19 |
ctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtata |
118 |
Q |
| |
|
|||||||| ||| | | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
5213765 |
ctcacatcactggcatacttatccctctttggaaattacatgcaaggatcattttcattgagcactttggctaatcactccaatctccagcatctatata |
5213864 |
T |
|
| Q |
119 |
tttcatcgaaaaacagcactggagtacacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaactt |
218 |
Q |
| |
|
||||||| ||| ||| ||| | | ||||||||||||||| ||||||||||| || ||||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
5213865 |
tttcatcacaaa---gcattggtgcaaacattgaaactgaaaagacaaagtggttacccaaatttcaattgaagacactcattcttagaaattgcaactt |
5213961 |
T |
|
| Q |
219 |
aaacaaggacaaaggaagtgtcattcctacttttctttcatatcaatataatttgatatt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5213962 |
aaacaaggacaaaggaagtgtcattcctacttttctttcatatcaatatagtttgatatt |
5214021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 273
Target Start/End: Original strand, 7142256 - 7142390
Alignment:
| Q |
138 |
tggagtacacattgaaactgaaagaacaaagtggtttcctaaatttcaattgaagtcactctttcttgcaaattgcaacttaaacaaggacaaaggaagt |
237 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||| ||||||| | | |||| | | || |||||||||| ||||| ||||||||||| | |
|
|
| T |
7142256 |
tggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacact-tatgttaaaaattgcaaccaaaacatggacaaaggaaat |
7142354 |
T |
|
| Q |
238 |
gtcattcctacttttctttcatatcaatataatttg |
273 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
7142355 |
gtcattcctagttttttttcatatcaacataatttg |
7142390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 5202773 - 5202887
Alignment:
| Q |
51 |
aaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttcagcatctgtatatttcatcgaaaaacagcactggagtacacatt |
150 |
Q |
| |
|
|||| ||| ||||||| |||||||| | ||||||||||||||||| | || |||||| |||| |||||||| || | | |||| ||||| ||||||| |
|
|
| T |
5202773 |
aaatcacacgcaaggaccattttcagtaagcactttggctaatcacttcacgcttcaggatctatatatttcctc---agaaagcattggagaacacatt |
5202869 |
T |
|
| Q |
151 |
gaaactgaaagaacaaag |
168 |
Q |
| |
|
|||||| ||| ||||||| |
|
|
| T |
5202870 |
gaaacttaaaaaacaaag |
5202887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 5202882 - 5202925
Alignment:
| Q |
227 |
acaaaggaagtgtcattcctacttttctttcatatcaatataatt |
271 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
5202882 |
acaaaggaagagtcattcctagttttctttcatat-aatataatt |
5202925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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