View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_47 (Length: 286)
Name: NF19305_low_47
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_47 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 39923796 - 39923532
Alignment:
| Q |
18 |
atcacccagttatgattttataataatatctgataaactttcaatccatttaacccgcacctctacaaaaatgttacgataagagtctcacgaataactc |
117 |
Q |
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| T |
39923796 |
atcacccagttatgattttataataatatctgataaacattcaatccatttaacccgcacctctacaaaaatgttacgataagagtctcacgaataactc |
39923697 |
T |
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| Q |
118 |
tatatcattaattttaaattatgtcaaagcaagcaggtatcgctttatagattaattagaggtaaagatgtagtgtgcaactcacttgtgtagctatttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39923696 |
tatatcattaattttaaattatgtcaaagcaagcaggtatcgctttatag----attagaggtaaagatgtagtgtgcaactcacttgtgtagctgtttt |
39923601 |
T |
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| Q |
218 |
tagtgcaatttaatgatccttgtgctcgcttcatgatccaacaacatgtactttttggtgttaaccctc |
286 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39923600 |
tagtgcaatttaatgatccttgtgctcgcttcataatccaacaacatgtactttttggtgttaaccctc |
39923532 |
T |
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