View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19305_low_5 (Length: 742)

Name: NF19305_low_5
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19305_low_5
NF19305_low_5
[»] chr4 (8 HSPs)
chr4 (1-528)||(53214124-53214654)
chr4 (258-359)||(4710288-4710390)
chr4 (287-360)||(42451827-42451901)
chr4 (270-307)||(16936094-16936131)
chr4 (127-201)||(11181475-11181549)
chr4 (132-182)||(27059341-27059391)
chr4 (104-153)||(9074413-9074462)
chr4 (88-145)||(29152290-29152347)
[»] chr8 (15 HSPs)
chr8 (221-305)||(24190891-24190975)
chr8 (103-203)||(17018577-17018676)
chr8 (103-203)||(17549014-17549113)
chr8 (271-307)||(39872185-39872221)
chr8 (275-344)||(5345311-5345380)
chr8 (116-192)||(2287709-2287785)
chr8 (271-307)||(7130619-7130655)
chr8 (271-307)||(17944828-17944864)
chr8 (307-367)||(28009227-28009287)
chr8 (307-367)||(28066530-28066590)
chr8 (287-360)||(41130732-41130805)
chr8 (120-201)||(12733599-12733680)
chr8 (307-368)||(28008601-28008662)
chr8 (307-368)||(28065904-28065965)
chr8 (270-307)||(42431689-42431726)
[»] chr7 (6 HSPs)
chr7 (222-344)||(15328843-15328966)
chr7 (275-307)||(16488185-16488217)
chr7 (241-344)||(36645061-36645165)
chr7 (292-359)||(48582278-48582346)
chr7 (307-365)||(37254022-37254079)
chr7 (271-301)||(42629204-42629234)
[»] chr1 (3 HSPs)
chr1 (233-336)||(46150397-46150501)
chr1 (102-165)||(32979388-32979450)
chr1 (109-203)||(7492615-7492709)
[»] chr2 (7 HSPs)
chr2 (226-360)||(26424917-26425052)
chr2 (272-307)||(38571671-38571706)
chr2 (234-307)||(6858689-6858762)
chr2 (271-306)||(3816313-3816348)
chr2 (211-253)||(6858711-6858753)
chr2 (287-344)||(6858766-6858824)
chr2 (271-300)||(304343-304372)
[»] chr5 (4 HSPs)
chr5 (226-359)||(5655261-5655395)
chr5 (271-307)||(25868123-25868159)
chr5 (270-307)||(14410768-14410805)
chr5 (271-307)||(25994946-25994982)
[»] scaffold0007 (1 HSPs)
scaffold0007 (271-307)||(186963-186999)
[»] chr6 (3 HSPs)
chr6 (98-149)||(9437516-9437567)
chr6 (115-182)||(32427760-32427827)
chr6 (103-150)||(33680732-33680779)
[»] chr3 (4 HSPs)
chr3 (271-306)||(53038903-53038938)
chr3 (114-152)||(26719526-26719564)
chr3 (102-155)||(26741017-26741070)
chr3 (307-344)||(38810084-38810121)


Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 53214654 - 53214124
Alignment:
Q  1 aatataatccataaacaatattttagtggttcagatcattacatctaaaacatgtcaagaatgtgcaaaaacttctgcattgagggttttgtcatatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53214654 aatataatccataaacaatattttagtggttcagatcattacatctgaaacatgtcaagaatgtgcaaaaacttctgcattgagggttttgtcatatttt 53214555  T
Q  101 ggattatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaatt 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53214554 ggattatttaatctgaatcagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaatt 53214455  T
Q  201 ggta--tttggtttaactcacacagggtttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgt--gactta 296  Q
    ||||  ||||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||  ||||||    
T  53214454 ggtatgtttggtttaactcacgcatggtttataacctacgtgagttaactcacacaggatttataaccagtatgagttaactcatgcagcgtgagactta 53214355  T
Q  297 agtcacacatggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcatttttctaagaataaagggcccataacnnnnnnnngt 396  Q
    |||||| |||| ||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||        ||    
T  53214354 agtcacgcatgatattttcgaaagtttagttgggagcgagcaatttttgatgggaggagagcatttttctaagaataaagggcccataacttttttttgt 53214255  T
Q  397 caatgaaagggttcaagacccgttcatannnnnnnnncttaagttgctatgatccataaattttataaatatttgaaaaatgctctttaaacttcattat 496  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  53214254 caatgaaagggttcaagacccgttcata-ttttttttcttaagttgctatgatccataaattttataaatatttgaaaaatgctctttatacttcattat 53214156  T
Q  497 ttgctctccggcactccgatagttaactgttg 528  Q
    ||||||||||||||||||||||||||||||||    
T  53214155 ttgctctccggcactccgatagttaactgttg 53214124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 4710390 - 4710288
Alignment:
Q  258 tttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatg-gtattttcgaaagtttagttgggagcgaacaatttttcatcggaggaga 356  Q
    ||||||||| | ||||||||||||| | |  |||||||||||||| |||| |||||||| ||||||| ||||||||||| |||||||| || |||| |||    
T  4710390 tttataaccggtatgagttaactcacgtaatgtgacttaagtcacgcatgagtattttcaaaagtttggttgggagcgagcaattttttatgggagaaga 4710291  T
Q  357 gca 359  Q
    |||    
T  4710290 gca 4710288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 42451901 - 42451827
Alignment:
Q  287 gcgtgacttaagtcacacatg-gtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcat 360  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||| | |||||||| || |||| |||||||    
T  42451901 gcgtgacttaagtcacacatgagtattttcgaaagtttggttgggagcaagcaattttttatgggagaagagcat 42451827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 16936094 - 16936131
Alignment:
Q  270 atgagttaactcatgcagcgtgacttaagtcacacatg 307  Q
    |||||||||||||||| |||||||||||||||||||||    
T  16936094 atgagttaactcatgcggcgtgacttaagtcacacatg 16936131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 11181475 - 11181549
Alignment:
Q  127 tacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattg 201  Q
    |||||||||||| | |||||||||| |||  |||||||| |||| | || |||||||| || |||||||||||||    
T  11181475 tacaagatttttgtatggtccacatcgcactaatagtttctatgatgcatgacgcataaaaacttctataaattg 11181549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 27059341 - 27059391
Alignment:
Q  132 gatttttctgtggtccacattgcatcaatagtttatatggtccacgacgca 182  Q
    ||||||||| |||||||||||||| | | ||||||| ||||||||||||||    
T  27059341 gatttttctatggtccacattgcaccgacagtttatgtggtccacgacgca 27059391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 9074462 - 9074413
Alignment:
Q  104 ttatttaatctgaaccagtcaaatacaagatttttctgtggtccacattg 153  Q
    |||| ||||| ||| | |||||||||||||||||| ||||||||||||||    
T  9074462 ttatataatccgaatctgtcaaatacaagatttttatgtggtccacattg 9074413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 29152347 - 29152290
Alignment:
Q  88 tttgtcatattttggattatttaatctgaaccagtcaaatacaagatttttctgtggt 145  Q
    ||||||||||||   |||||||||| ||||||||||||||| ||| ||||| ||||||    
T  29152347 tttgtcatatttcatattatttaatatgaaccagtcaaatataaggtttttttgtggt 29152290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 24190891 - 24190975
Alignment:
Q  221 cagggtttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacaca 305  Q
    ||||||||||||||||| | |||||||||||  | |||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  24190891 cagggtttataacctacatgagttaactcacgtatgatttataaccagcgtgagttaactcacgcagcgtgacttaagtcacaca 24190975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 17018577 - 17018676
Alignment:
Q  103 attatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattgg 202  Q
    ||||| ||||||||||||||||| |||| || |||| ||||||||||||||||  ||  |||||| |||||||||| |||  ||| ||||||||||||||    
T  17018577 attatataatctgaaccagtcaagtacatgaattttttgtggtccacattgcactaaatgtttatgtggtccacgatgcactgaa-cttctataaattgg 17018675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 17549014 - 17549113
Alignment:
Q  103 attatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattgg 202  Q
    ||||| ||||||||||||||||| |||| || |||| ||||||||||||||||  ||  |||||| |||||||||| |||  ||| ||||||||||||||    
T  17549014 attatataatctgaaccagtcaagtacatgaattttttgtggtccacattgcactaaatgtttatgtggtccacgatgcactgaa-cttctataaattgg 17549112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 39872185 - 39872221
Alignment:
Q  271 tgagttaactcatgcagcgtgacttaagtcacacatg 307  Q
    |||||||||||||||||||||||||||||||||||||    
T  39872185 tgagttaactcatgcagcgtgacttaagtcacacatg 39872221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 5345380 - 5345311
Alignment:
Q  275 ttaactcatgcagcgtgacttaagtcacacatggtattttcgaaagtttagttgggagcgaacaattttt 344  Q
    |||||| | ||||||||||||||||||  |||||| |||||| ||||||  |||||||||| ||||||||    
T  5345380 ttaacttacgcagcgtgacttaagtcatgcatggtgttttcggaagtttgattgggagcgagcaattttt 5345311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 2287785 - 2287709
Alignment:
Q  116 aaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttc 192  Q
    ||||| |||| |||| ||||||||||||||||||||| || | | | |||||||||||||||| ||| |||| ||||    
T  2287785 aaccaatcaagtacatgatttttctgtggtccacattacaccgacaatttatatggtccacgaggcaaagaaacttc 2287709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 7130619 - 7130655
Alignment:
Q  271 tgagttaactcatgcagcgtgacttaagtcacacatg 307  Q
    |||||||||||||||||||||||||||||||| ||||    
T  7130619 tgagttaactcatgcagcgtgacttaagtcacgcatg 7130655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 17944828 - 17944864
Alignment:
Q  271 tgagttaactcatgcagcgtgacttaagtcacacatg 307  Q
    |||||||||||||||||||| ||||||||||||||||    
T  17944828 tgagttaactcatgcagcgttacttaagtcacacatg 17944864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 28009227 - 28009287
Alignment:
Q  307 ggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcatttttcta 367  Q
    |||||||| |||||||| ||||||||||| |||||||| || |||| ||||||||| ||||    
T  28009227 ggtatttttgaaagtttggttgggagcgagcaatttttgatgggagaagagcatttctcta 28009287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 28066530 - 28066590
Alignment:
Q  307 ggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcatttttcta 367  Q
    |||||||| |||||||| ||||||||||| |||||||| || |||| ||||||||| ||||    
T  28066530 ggtatttttgaaagtttggttgggagcgagcaatttttgatgggagaagagcatttctcta 28066590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 41130732 - 41130805
Alignment:
Q  287 gcgtgacttaagtcacacatgg-tattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcat 360  Q
    ||||||||||||| || ||||| |||||||| |||||| ||||||| |||||||||||| || |||| |||||||    
T  41130732 gcgtgacttaagttacgcatgggtattttcggaagttt-gttgggaacgaacaattttttatgggagaagagcat 41130805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 12733680 - 12733599
Alignment:
Q  120 agtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattg 201  Q
    |||||| |||||||||||| |||||| ||||||||| ||| | ||||| || || | || ||| | ||||||||||||||||    
T  12733680 agtcaagtacaagatttttatgtggtacacattgcaccaacaatttatgtgatcaatgatgcacataaccttctataaattg 12733599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 28008662 - 28008601
Alignment:
Q  307 ggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcatttttctaa 368  Q
    ||||||||  ||||||| ||||||| ||| |||||||| || |||| |||||||||||||||    
T  28008662 ggtatttttaaaagttttgttgggatcgagcaattttttatgggagaagagcatttttctaa 28008601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 28065965 - 28065904
Alignment:
Q  307 ggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcatttttctaa 368  Q
    ||||||||  ||||||| ||||||| ||| |||||||| || |||| |||||||||||||||    
T  28065965 ggtatttttaaaagttttgttgggatcgagcaattttttatgggagaagagcatttttctaa 28065904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 42431726 - 42431689
Alignment:
Q  270 atgagttaactcatgcagcgtgacttaagtcacacatg 307  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  42431726 atgagttaactcatgcagcatgacttaagtcacgcatg 42431689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 222 - 344
Target Start/End: Complemental strand, 15328966 - 15328843
Alignment:
Q  222 agggtttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatg-gtattttcgaaag 320  Q
    |||||||||||||||| | ||||||||||  || ||||||||||||| |||| |||| |||| |||||| ||||||||||  || |  |||||||||| |    
T  15328966 agggtttataacctacatgagttaactcaagcaggatttataaccagcatgaattaattcatacagcgtaacttaagtcatgcaagaatattttcgaatg 15328867  T
Q  321 tttagttgggagcgaacaattttt 344  Q
    ||| |||||||| |||||||||||    
T  15328866 tttggttgggagtgaacaattttt 15328843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 307
Target Start/End: Original strand, 16488185 - 16488217
Alignment:
Q  275 ttaactcatgcagcgtgacttaagtcacacatg 307  Q
    |||||||||||||||||||||||||||||||||    
T  16488185 ttaactcatgcagcgtgacttaagtcacacatg 16488217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 344
Target Start/End: Complemental strand, 36645165 - 36645061
Alignment:
Q  241 agttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatgg-tattttcgaaagtttagttgggagcgaacaa 339  Q
    ||||||||||| |||||||||||| | |  ||||||||||||  || | |||| ||| |||| || || |||||||| |||||| ||||||||||| |||    
T  36645165 agttaactcacgcaagatttataatcggcgtgagttaactcacacaacatgacataaatcacgcaggggtattttcggaagtttcgttgggagcgagcaa 36645066  T
Q  340 ttttt 344  Q
    |||||    
T  36645065 ttttt 36645061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 48582278 - 48582346
Alignment:
Q  292 acttaagtcacacat-ggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagca 359  Q
    ||||||||||||||  ||||||||||||||||| ||||||||| | |||||||| || |||| ||||||    
T  48582278 acttaagtcacacaaaggtattttcgaaagtttggttgggagcaagcaatttttgatgggagaagagca 48582346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 37254022 - 37254079
Alignment:
Q  307 ggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcatttttc 365  Q
    ||||||||| ||||||||||||||| ||| |||||||| || |||| ||||||||||||    
T  37254022 ggtattttcaaaagtttagttgggatcgagcaattttt-atgggagaagagcatttttc 37254079  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 301
Target Start/End: Original strand, 42629204 - 42629234
Alignment:
Q  271 tgagttaactcatgcagcgtgacttaagtca 301  Q
    |||||||||||||||||||||||||||||||    
T  42629204 tgagttaactcatgcagcgtgacttaagtca 42629234  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 46150397 - 46150501
Alignment:
Q  233 cctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacaca-tggtattttcgaaagtttagttggga 331  Q
    ||||||| |||||| |||| |||||||||||||  |  |||||||||||| |||||||||||||||| || || |||||||||  ||||||| |||||||    
T  46150397 cctacgtgagttaattcacgcaagatttataacatgcgtgagttaactcacgcagcgtgacttaagtgacgcattggtatttttaaaagtttggttggga 46150496  T
Q  332 gcgaa 336  Q
    |||||    
T  46150497 gcgaa 46150501  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 32979388 - 32979450
Alignment:
Q  102 gattatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagttt 165  Q
    |||||| ||||||||||||||||| ||||||| |||| |||| |||| |||||||| |||||||    
T  32979388 gattatataatctgaaccagtcaagtacaaga-ttttatgtgatccatattgcatcgatagttt 32979450  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 7492615 - 7492709
Alignment:
Q  109 taatctgaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattggt 203  Q
    ||||| |||||| |||| |||||||||||| | || || |||||||| |   | ||||||||||| |||||||| | || |||||||||||||||    
T  7492615 taatcggaaccattcaagtacaagatttttatatgatcaacattgcaccggcaatttatatggtctacgacgcacaaaaacttctataaattggt 7492709  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 226 - 360
Target Start/End: Complemental strand, 26425052 - 26424917
Alignment:
Q  226 tttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacaca-tggtattttcgaaagttta 324  Q
    |||||||||||||| ||||||||||  |||| ||||||||| |   ||||||||||| || ||||||||||| |||| ||  |||||||||||||||||     
T  26425052 tttataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactcacgcggcgtgacttaaatcacgcaggggtattttcgaaagtttg 26424953  T
Q  325 gttgggagcgaacaatttttcatcggaggagagcat 360  Q
     || | ||||| |||||||| || |||| |||||||    
T  26424952 attagaagcgaccaatttttgataggagaagagcat 26424917  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 272 - 307
Target Start/End: Complemental strand, 38571706 - 38571671
Alignment:
Q  272 gagttaactcatgcagcgtgacttaagtcacacatg 307  Q
    ||||||||||||||||||||||||||||||||||||    
T  38571706 gagttaactcatgcagcgtgacttaagtcacacatg 38571671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 6858762 - 6858689
Alignment:
Q  234 ctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatg 307  Q
    |||||| ||||||||||| |||| |||||||||    ||||||||||||  | |||||||||||||||||||||    
T  6858762 ctacgtgagttaactcacgcaaggtttataacctacgtgagttaactcacactgcgtgacttaagtcacacatg 6858689  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 3816313 - 3816348
Alignment:
Q  271 tgagttaactcatgcagcgtgacttaagtcacacat 306  Q
    |||||||||||| |||||||||||||||||||||||    
T  3816313 tgagttaactcacgcagcgtgacttaagtcacacat 3816348  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 6858753 - 6858711
Alignment:
Q  211 ttaactcacacagggtttataacctacgtaagttaactcacac 253  Q
    ||||||||| || |||||||||||||||| |||||||||||||    
T  6858753 ttaactcacgcaaggtttataacctacgtgagttaactcacac 6858711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 6858766 - 6858824
Alignment:
Q  287 gcgtgacttaagtcacaca-tggtattttcgaaagtttagttgggagcgaacaattttt 344  Q
    |||||||||||||||| || |||||| ||||||||||| |||| ||||| |||||||||    
T  6858766 gcgtgacttaagtcacgcagtggtatattcgaaagtttggttgagagcggacaattttt 6858824  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 300
Target Start/End: Original strand, 304343 - 304372
Alignment:
Q  271 tgagttaactcatgcagcgtgacttaagtc 300  Q
    ||||||||||||||||||||||||||||||    
T  304343 tgagttaactcatgcagcgtgacttaagtc 304372  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 226 - 359
Target Start/End: Complemental strand, 5655395 - 5655261
Alignment:
Q  226 tttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatgg-tattttcgaaagttta 324  Q
    |||||||||||| | ||||||||| | ||  ||||||||||    |||||||||||   ||||||||||||||||||||| |  |||||||| ||||||     
T  5655395 tttataacctacatgagttaactcgcgcagaatttataacctatgtgagttaactcgcacagcgtgacttaagtcacacaggaatattttcggaagtttg 5655296  T
Q  325 gttgggagcgaacaatttttcatcggaggagagca 359  Q
    ||||| |||||||||||||| || |||| ||||||    
T  5655295 gttggaagcgaacaattttttatgggagaagagca 5655261  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 25868159 - 25868123
Alignment:
Q  271 tgagttaactcatgcagcgtgacttaagtcacacatg 307  Q
    |||||||||||||||||||||||||||||||||||||    
T  25868159 tgagttaactcatgcagcgtgacttaagtcacacatg 25868123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 14410768 - 14410805
Alignment:
Q  270 atgagttaactcatgcagcgtgacttaagtcacacatg 307  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  14410768 atgagttaactcacgcagcgtgacttaagtcacacatg 14410805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 25994946 - 25994982
Alignment:
Q  271 tgagttaactcatgcagcgtgacttaagtcacacatg 307  Q
    |||||||||||||||||||||||||||||||| ||||    
T  25994946 tgagttaactcatgcagcgtgacttaagtcacgcatg 25994982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 186999 - 186963
Alignment:
Q  271 tgagttaactcatgcagcgtgacttaagtcacacatg 307  Q
    |||||||||||||||| ||||||||||||||||||||    
T  186999 tgagttaactcatgcaacgtgacttaagtcacacatg 186963  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 9437567 - 9437516
Alignment:
Q  98 tttggattatttaatctgaaccagtcaaatacaagatttttctgtggtccac 149  Q
    |||||||||| |||| ||||  |||||| |||||||||||||||||||||||    
T  9437567 tttggattatataatatgaattagtcaagtacaagatttttctgtggtccac 9437516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 32427760 - 32427827
Alignment:
Q  115 gaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgca 182  Q
    |||||||| || |||| ||||||||||||||||| |||||| | | | ||||| ||||||||||||||    
T  32427760 gaaccagttaagtacatgatttttctgtggtccatattgcaccgacaatttatttggtccacgacgca 32427827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 33680732 - 33680779
Alignment:
Q  103 attatttaatctgaaccagtcaaatacaagatttttctgtggtccaca 150  Q
    ||||| ||||||||||||||||| ||||  ||||||||||||||||||    
T  33680732 attatataatctgaaccagtcaagtacataatttttctgtggtccaca 33680779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 306
Target Start/End: Complemental strand, 53038938 - 53038903
Alignment:
Q  271 tgagttaactcatgcagcgtgacttaagtcacacat 306  Q
    ||||||||||||||| ||||||||||||||||||||    
T  53038938 tgagttaactcatgcggcgtgacttaagtcacacat 53038903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 26719526 - 26719564
Alignment:
Q  114 tgaaccagtcaaatacaagatttttctgtggtccacatt 152  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  26719526 tgaaccagtcaaatacaagattttgatgtggtccacatt 26719564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 26741017 - 26741070
Alignment:
Q  102 gattatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgca 155  Q
    |||||| |||| ||||||||||||| ||||||||||  | ||||||||||||||    
T  26741017 gattatataatttgaaccagtcaaacacaagattttgatatggtccacattgca 26741070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 38810121 - 38810084
Alignment:
Q  307 ggtattttcgaaagtttagttgggagcgaacaattttt 344  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  38810121 ggtattttcgaaagttaggttgggagcgaacaattttt 38810084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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