View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19305_low_57 (Length: 253)

Name: NF19305_low_57
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19305_low_57
NF19305_low_57
[»] chr2 (19 HSPs)
chr2 (13-253)||(13110287-13110527)
chr2 (141-250)||(4666213-4666323)
chr2 (139-253)||(11522072-11522185)
chr2 (127-211)||(42946656-42946741)
chr2 (142-236)||(14196370-14196461)
chr2 (127-222)||(38216438-38216534)
chr2 (139-253)||(16625695-16625809)
chr2 (164-253)||(36030894-36030984)
chr2 (137-198)||(6584765-6584826)
chr2 (141-198)||(44656696-44656753)
chr2 (141-228)||(9087613-9087701)
chr2 (158-252)||(29880859-29880954)
chr2 (153-214)||(25463674-25463736)
chr2 (139-211)||(9087397-9087470)
chr2 (139-253)||(27987745-27987857)
chr2 (139-253)||(28074278-28074390)
chr2 (139-253)||(12941687-12941803)
chr2 (141-217)||(13767496-13767572)
chr2 (150-226)||(43100124-43100200)
[»] chr4 (23 HSPs)
chr4 (93-237)||(28880020-28880166)
chr4 (139-217)||(27143254-27143333)
chr4 (141-223)||(46176589-46176672)
chr4 (139-229)||(49936578-49936669)
chr4 (139-253)||(40422962-40423078)
chr4 (139-253)||(46669834-46669950)
chr4 (139-198)||(48620365-48620424)
chr4 (139-211)||(21443098-21443171)
chr4 (127-230)||(37662707-37662811)
chr4 (91-198)||(47063709-47063817)
chr4 (127-209)||(18369761-18369844)
chr4 (127-209)||(36593079-36593162)
chr4 (139-198)||(52430521-52430580)
chr4 (127-217)||(56117946-56118037)
chr4 (143-198)||(16878777-16878834)
chr4 (139-229)||(30307445-30307535)
chr4 (141-198)||(32648950-32649007)
chr4 (141-217)||(41844513-41844590)
chr4 (141-198)||(52594572-52594629)
chr4 (139-253)||(368133-368249)
chr4 (141-193)||(34236476-34236528)
chr4 (129-217)||(42649888-42649979)
chr4 (127-217)||(56439299-56439388)
[»] chr3 (25 HSPs)
chr3 (128-253)||(46891451-46891577)
chr3 (149-237)||(42157724-42157813)
chr3 (119-251)||(4247172-4247306)
chr3 (133-198)||(38401865-38401930)
chr3 (142-230)||(48444584-48444673)
chr3 (139-253)||(3333940-3334055)
chr3 (139-217)||(13638502-13638581)
chr3 (127-224)||(21777209-21777305)
chr3 (139-217)||(11500177-11500257)
chr3 (141-252)||(32720973-32721084)
chr3 (127-193)||(23613120-23613186)
chr3 (143-223)||(44979477-44979558)
chr3 (140-211)||(19148244-19148316)
chr3 (139-214)||(52620764-52620840)
chr3 (139-217)||(7302160-7302239)
chr3 (139-253)||(35283163-35283278)
chr3 (129-192)||(44401141-44401204)
chr3 (139-193)||(40674183-40674237)
chr3 (139-251)||(1132827-1132940)
chr3 (149-198)||(2927930-2927979)
chr3 (141-198)||(39966824-39966881)
chr3 (139-192)||(53888563-53888616)
chr3 (158-213)||(9241580-9241636)
chr3 (139-203)||(27922037-27922101)
chr3 (149-224)||(42668130-42668206)
[»] chr1 (27 HSPs)
chr1 (139-253)||(43530188-43530303)
chr1 (125-193)||(6538020-6538088)
chr1 (131-224)||(32123533-32123624)
chr1 (139-253)||(49102865-49102977)
chr1 (139-251)||(35619406-35619519)
chr1 (174-253)||(6538098-6538178)
chr1 (139-230)||(43036236-43036328)
chr1 (139-253)||(25561208-25561323)
chr1 (127-190)||(51572303-51572366)
chr1 (143-196)||(19920970-19921023)
chr1 (139-251)||(34551980-34552093)
chr1 (162-198)||(48432724-48432760)
chr1 (127-178)||(29739163-29739214)
chr1 (139-217)||(30543289-30543368)
chr1 (139-237)||(33579329-33579428)
chr1 (141-230)||(24436845-24436935)
chr1 (175-236)||(40136131-40136193)
chr1 (139-193)||(45752188-45752242)
chr1 (160-237)||(52073364-52073442)
chr1 (139-215)||(19652223-19652300)
chr1 (141-217)||(23079852-23079929)
chr1 (165-253)||(50097716-50097805)
chr1 (143-199)||(6245070-6245126)
chr1 (154-198)||(36668595-36668639)
chr1 (139-230)||(41432675-41432767)
chr1 (141-193)||(44195924-44195976)
chr1 (141-193)||(44303788-44303840)
[»] chr7 (21 HSPs)
chr7 (139-237)||(33187753-33187852)
chr7 (139-250)||(38138007-38138119)
chr7 (139-251)||(14676306-14676419)
chr7 (170-229)||(31770246-31770306)
chr7 (139-198)||(1278014-1278073)
chr7 (141-251)||(44487227-44487338)
chr7 (160-253)||(20513405-20513499)
chr7 (142-253)||(46303332-46303439)
chr7 (139-192)||(12624326-12624379)
chr7 (155-198)||(12884694-12884737)
chr7 (158-224)||(13858417-13858484)
chr7 (127-217)||(17818350-17818441)
chr7 (159-253)||(22556594-22556689)
chr7 (163-198)||(45471863-45471898)
chr7 (149-237)||(4787908-4787998)
chr7 (140-217)||(42266933-42267011)
chr7 (127-192)||(21687497-21687562)
chr7 (141-198)||(22394230-22394287)
chr7 (141-217)||(38991399-38991476)
chr7 (139-230)||(13044223-13044315)
chr7 (139-230)||(45510418-45510510)
[»] chr6 (15 HSPs)
chr6 (139-217)||(2502292-2502371)
chr6 (139-253)||(8439286-8439400)
chr6 (141-230)||(22817254-22817344)
chr6 (89-217)||(29054592-29054722)
chr6 (139-237)||(4089303-4089402)
chr6 (141-215)||(6026249-6026324)
chr6 (139-237)||(13120328-13120427)
chr6 (175-253)||(33184278-33184357)
chr6 (158-237)||(33677118-33677195)
chr6 (160-217)||(33939049-33939107)
chr6 (185-253)||(6695418-6695487)
chr6 (139-251)||(26683393-26683505)
chr6 (139-230)||(19477332-19477424)
chr6 (139-210)||(20381799-20381871)
chr6 (139-226)||(26289627-26289715)
[»] chr8 (18 HSPs)
chr8 (139-252)||(13258562-13258676)
chr8 (139-253)||(1839710-1839825)
chr8 (157-237)||(32502927-32503007)
chr8 (141-189)||(2457830-2457878)
chr8 (139-237)||(10878691-10878787)
chr8 (139-237)||(35856436-35856535)
chr8 (139-198)||(41455335-41455394)
chr8 (133-198)||(11961467-11961532)
chr8 (139-253)||(27085424-27085540)
chr8 (140-208)||(28517196-28517264)
chr8 (139-198)||(32229-32288)
chr8 (139-198)||(16424214-16424273)
chr8 (139-217)||(40985000-40985079)
chr8 (139-226)||(10255513-10255602)
chr8 (161-237)||(13537440-13537517)
chr8 (161-237)||(13626988-13627065)
chr8 (141-217)||(43007776-43007853)
chr8 (139-253)||(8948701-8948817)
[»] chr5 (23 HSPs)
chr5 (133-251)||(31632907-31633023)
chr5 (139-253)||(4841599-4841714)
chr5 (139-217)||(7398707-7398785)
chr5 (91-251)||(19389720-19389882)
chr5 (133-217)||(1474942-1475027)
chr5 (139-211)||(1935039-1935112)
chr5 (139-251)||(17668026-17668139)
chr5 (141-217)||(26018819-26018896)
chr5 (139-230)||(37909067-37909158)
chr5 (139-217)||(6491260-6491339)
chr5 (139-237)||(9684697-9684796)
chr5 (197-253)||(15917527-15917583)
chr5 (127-210)||(29799701-29799785)
chr5 (139-237)||(3081238-3081337)
chr5 (139-217)||(25779571-25779650)
chr5 (91-223)||(13839480-13839613)
chr5 (150-192)||(19338524-19338566)
chr5 (139-217)||(35708689-35708767)
chr5 (128-198)||(43265237-43265307)
chr5 (139-227)||(6044609-6044698)
chr5 (139-192)||(15916959-15917012)
chr5 (88-192)||(2561118-2561222)
chr5 (158-217)||(28154785-28154845)
[»] scaffold0717 (1 HSPs)
scaffold0717 (141-198)||(1656-1713)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 13110287 - 13110527
Alignment:
Q  13 caaaggaaggaggaaagggaaataaaagaaaggatgatctcttaacttgaatatgaggtaatatcacatcaagaaggaggaactaaaaaattgtatcgaa 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13110287 caaaggaaggaggaaagggaaatgaaagaaaggatgatctcttaacttgaatatgaggtaacatcacatcaagaaggaggaactaaaaaattgtatcgaa 13110386  T
Q  113 tgaagattttagatgtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcat 212  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13110387 tgaaggttttagatgtttagataaactcttcaaatctaatatatattgttatagtactctcaaaattgaaaatatattaatgataacatttatttatcat 13110486  T
Q  213 tctctgcaaaaatactctatcaaaacctatgaaagatttct 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13110487 tctctgcaaaaatactctatcaaaacctatgaaagatttct 13110527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 4666213 - 4666323
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacc 239  Q
    ||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||| |||||   |||||||||| ||||||      
T  4666213 ttcaaatttaatatatcttgttataatattcttaaaatttaaaatatattaatcataagcattaatttatcactctctaataaaatactctttcaaaaaa 4666312  T
Q  240 tatgaaagatt 250  Q
    |||||||||||    
T  4666313 tatgaaagatt 4666323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 11522185 - 11522072
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||||||| ||||||||||| ||| |||||| |||||||||||||  | |||||| ||||||||  ||||  ||||||||||| ||||||    
T  11522185 tcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcttaaacattaatttatca--ctctaaaaaaatactctttcaaaa 11522088  T
Q  238 cctatgaaagatttct 253  Q
      | ||||||||||||    
T  11522087 aatgtgaaagatttct 11522072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 42946741 - 42946656
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatca 211  Q
    ||||| ||||| ||||||||| |||||||| |||||||| || ||| |||||| ||||||||||||| || |||||| ||||||||    
T  42946741 gtttatataaattcttcaaatttaatatatgttgttatactattcttaaaattaaaaatatattaatcataaacattaatttatca 42946656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 14196370 - 14196461
Alignment:
Q  142 tcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctctgcaaaaatactctatcaaa 236  Q
    ||||||| ||| ||| ||||||||||||||   ||||| ||| ||||||||| ||||||||  |||||||||||||| ||||| ||||| |||||    
T  14196370 tcaaatccaatctatgttgttataatactc---aaattaaaattatattaatcataacattcttttatcattctctgtaaaaacactctctcaaa 14196461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 38216534 - 38216438
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaa 222  Q
    ||||||||||  |||||||||  ||| ||| || |||||||||||| |||||| ||||||||||||| || |||||| || ||||||||||| ||||    
T  38216534 gtttagataatttcttcaaattcaatctatgtttttataatactctaaaaattaaaaatatattaatcataaacattcatctatcattctctacaaa 38216438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 16625809 - 16625695
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||| ||| ||||||||||| ||| || ||| ||||||||| ||| |||| ||||  |||||||||||||  ||||||||||| ||||||    
T  16625809 tcttcaaatttaatctatgttgttataatattcttaatattaaaaatatatgaatcataagcattggtttatcattctct-aaaaaatactctttcaaaa 16625711  T
Q  238 cctatgaaagatttct 253  Q
      | ||||||||||||    
T  16625710 aatgtgaaagatttct 16625695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 36030894 - 36030984
Alignment:
Q  164 taatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttct 253  Q
    ||||| ||| |||||| ||||||||||||| |||| |||| ||||||||||||||  ||||||||||| || |||  | ||||||||||||    
T  36030894 taatattcttaaaattaaaaatatattaatcataagcattaatttatcattctctaaaaaaatactctttccaaaaatgtgaaagatttct 36030984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 6584826 - 6584765
Alignment:
Q  137 actcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    |||| |||||| |||||||||||||||||||| | | |||||| ||||||||||||| ||||    
T  6584826 actcgtcaaatttaatatatattgttataatatttttaaaatttaaaatatattaatcataa 6584765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 44656753 - 44656696
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  44656753 ttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 44656696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 9087701 - 9087613
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatact 228  Q
    ||||||| ||||||||||||| |||||| | | |||||| ||||||||||||| || |||||| |||||||| ||| |  |||||||||    
T  9087701 ttcaaatttaatatatattgtcataatattattaaaattaaaaatatattaatcataaacattaatttatcactctttaaaaaaatact 9087613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 29880859 - 29880954
Alignment:
Q  158 ttgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttc 252  Q
    ||||||||||| | |||||||| ||||||||||||| |||| ||||  |||||||||||||  |||| | |||| |||||| |  |||||||||||    
T  29880859 ttgttataatattatcaaaattaaaaatatattaatcataagcattcgtttatcattctctaaaaaattgctctttcaaaaacagtgaaagatttc 29880954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 25463736 - 25463674
Alignment:
Q  153 atatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattc 214  Q
    |||||||||||||||||||  |||||| ||| ||||||||| || || |||||||||||||||    
T  25463736 atatattgttataatactcgaaaaattaaaattatattaatcataaatatttatttatcattc 25463674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 9087470 - 9087397
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatca 211  Q
    ||||||||| |||||||| |||| |||||| | | |||||| ||||||||||||| |||| |||| ||||||||    
T  9087470 tcttcaaatttaatatatgttgtcataatattattaaaattaaaaatatattaatcataagcattaatttatca 9087397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 27987745 - 27987857
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||||||| ||| ||||||| ||| |||||| ||||||||   || |||| |||| |||||||| ||||| |||||| ||||| |||| |    
T  27987745 tcttcaaatttaatatatgttgatataatattcttaaaattaaaaatata---atcataagcattaatttatcactctctacaaaaacactctttcaaca 27987841  T
Q  238 cctatgaaagatttct 253  Q
      | ||||||||||||    
T  27987842 aatgtgaaagatttct 27987857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 28074278 - 28074390
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||||||| ||| ||||||| ||| |||||| ||||||||   || |||| |||| |||||||| ||||| |||||| ||||| |||| |    
T  28074278 tcttcaaatttaatatatgttgatataatattcttaaaattaaaaatata---atcataagcattaatttatcactctctacaaaaacactctttcaaca 28074374  T
Q  238 cctatgaaagatttct 253  Q
      | ||||||||||||    
T  28074375 aatgtgaaagatttct 28074390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 12941803 - 12941687
Alignment:
Q  139 tcttcaaatctaatatatatt-gttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaa 236  Q
    ||||||||| |||||||| || ||||||||| | | |||||| ||||||||||||  || ||| || |||||||| |||||| ||||||| | | |||||    
T  12941803 tcttcaaatttaatatatgtttgttataatatttttaaaattaaaaatatattaaccataaacgttaatttatcactctctgaaaaaatattttttcaaa 12941704  T
Q  237 acctatgaaagatttct 253  Q
    |  | ||||||||||||    
T  12941703 aaatttgaaagatttct 12941687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 13767496 - 13767572
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctct 217  Q
    |||||||  ||| ||| ||||||||||| | | |||||| ||||||||||||| ||||   ||||||||||||||||    
T  13767496 ttcaaattcaatctatgttgttataatatttttaaaattaaaaatatattaatcataaacattatttatcattctct 13767572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 43100200 - 43100124
Alignment:
Q  150 aatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctctgcaaaaata 226  Q
    ||||||| ||||||||||| ||| |||| | ||||||||||||| | || | | |||||||||||| | ||||||||    
T  43100200 aatatatgttgttataatattcttaaaagtaaaaatatattaatcacaaaactaatttatcattctttacaaaaata 43100124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 237
Target Start/End: Original strand, 28880020 - 28880166
Alignment:
Q  93 aactaaaaaattgtatcgaatgaagattttagatg-tttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatatta 191  Q
    |||||||| ||||||| |||||| |||||| || | |||| || || ||||||||| |||||||| ||||||||||| ||| |||||| |||||||||||    
T  28880020 aactaaaatattgtattgaatgaggattttggaggatttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatatta 28880119  T
Q  192 atgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    || || |||||| |||||||| |||||  ||||||||||| ||||||    
T  28880120 atcataaacattaatttatcactctctaaaaaaatactctttcaaaa 28880166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 27143254 - 27143333
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 217  Q
    ||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||| |||||    
T  27143254 tcttcaaatttaatatatattgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcactctct 27143333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 46176589 - 46176672
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaa 223  Q
    |||||||||||| ||||||||||||||||| ||||| || |||||| |||||| ||||  | |||||||||||||||| |||||    
T  46176589 ttcaaatctaatctatattgttataatactttcaaagttaaaaatacattaatcataagtacttatttatcattctctacaaaa 46176672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 49936578 - 49936669
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactc 229  Q
    |||||||||  ||| ||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| ||||||||||||||  ||||||||||    
T  49936578 tcttcaaattcaatctatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcattctctaaaaaaatactc 49936669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 40423078 - 40422962
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct-gcaaaaatactctatcaaa 236  Q
    ||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||||| || || ||| |||||||| |||||   ||||||||||| |||||    
T  40423078 tcttcaaatttaatctatgttgttataatattcttaaaattaaaaatatattaatcataaatattaatttatcactctctaaaaaaaatactctttcaaa 40422979  T
Q  237 acctatgaaagatttct 253  Q
    |  | ||||||||||||    
T  40422978 aattgtgaaagatttct 40422962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 46669950 - 46669834
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct-gcaaaaatactctatcaaa 236  Q
    |||| |||| |||||||| ||||||||||| ||| |||||| ||||||||||||| |||| |||  ||||||||||||||   ||||||||||| | |||    
T  46669950 tctttaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataagcataaatttatcattctctaaaaaaaatactctttaaaa 46669851  T
Q  237 acctatgaaagatttct 253  Q
    |  | ||||||||||||    
T  46669850 aaatgtgaaagatttct 46669834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 48620365 - 48620424
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  48620365 tcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 48620424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 21443098 - 21443171
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatca 211  Q
    ||||||||| ||||||||||| |||||||| | | |||||| ||||||||||||| |||| |||| ||||||||    
T  21443098 tcttcaaatttaatatatattattataatattttaaaaattaaaaatatattaataataagcattaatttatca 21443171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 37662707 - 37662811
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaat 225  Q
    |||||||| || ||||||||| |||||||| || |||||||| | | |||||| ||||||||||||  |||| ||||  ||||||| |||||  ||||||    
T  37662707 gtttagatgaattcttcaaatttaatatatgttcttataatatttttaaaattaaaaatatattaaacataagcattattttatcactctctaaaaaaat 37662806  T
Q  226 actct 230  Q
    |||||    
T  37662807 actct 37662811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 47063709 - 47063817
Alignment:
Q  91 ggaactaaaaaattgtatcgaatgaagattttagatg-tttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatat 189  Q
    |||||||||||||||||| | | || ||||| ||| | ||||  | || ||||||||| |||||||| ||||||| ||| ||| |||||| |||||||||    
T  47063709 ggaactaaaaaattgtattggaagaggatttgagagggtttatgtgaattcttcaaatttaatatatgttgttattatattcttaaaattaaaaatatat 47063808  T
Q  190 taatgataa 198  Q
    |||| ||||    
T  47063809 taatcataa 47063817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 18369761 - 18369844
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttat 209  Q
    ||||||||||| |||| ||||||| | ||| |||||| |||||| | ||| || ||||||||||||| || |||||||||||||    
T  18369761 gtttagataaattctttaaatctattttatgttgttacaatacttttaaagttaaaaatatattaataataaacatttatttat 18369844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 36593162 - 36593079
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttat 209  Q
    ||||||||||| |||| ||||||| | ||| |||||| |||||| | ||| || ||||||||||||| || |||||||||||||    
T  36593162 gtttagataaattctttaaatctattttatgttgttacaatacttttaaagttaaaaatatattaataataaacatttatttat 36593079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 52430580 - 52430521
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||||| |||||||| ||||||||||| | | |||||| ||||||||||||| ||||    
T  52430580 tcttcaaatttaatatatgttgttataatatttttaaaattaaaaatatattaatcataa 52430521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 56117946 - 56118037
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 217  Q
    ||||| ||||| |||| |||| ||| |||| ||||||||||| ||| |||||  ||||||||| ||| |||| |||| ||||||||||||||    
T  56117946 gtttacataaattctttaaatttaacatatgttgttataatattcttaaaataaaaaatatatgaatcataatcattgatttatcattctct 56118037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 16878777 - 16878834
Alignment:
Q  143 caaatctaatatatattgttataatact--ctcaaaattgaaaatatattaatgataa 198  Q
    |||||| |||||||||||||||||||||  | ||||||| ||||||||||||| ||||    
T  16878777 caaatccaatatatattgttataatactcacgcaaaattaaaaatatattaatcataa 16878834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 30307445 - 30307535
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctctgcaaaaatactc 229  Q
    ||||||||| ||||||||  |||| ||||| ||| |||||| ||||||||||||| ||||   |||||| ||| |||||  ||||||||||    
T  30307445 tcttcaaatttaatatatgctgttgtaatattcttaaaattaaaaatatattaatcataagcattatttttcactctctaaaaaaatactc 30307535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 32649007 - 32648950
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  32649007 ttcaaatttaatctatgttgttataatattcttaaaattaaaaatatattaatcataa 32648950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 41844513 - 41844590
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 217  Q
    |||||||| ||| ||| ||||||||||| ||| |||||| ||| ||||||||| ||||  ||| ||||||||||||||    
T  41844513 ttcaaatccaatctatcttgttataatattcttaaaattaaaagtatattaatcataagtattaatttatcattctct 41844590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 52594629 - 52594572
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    |||||||||||| ||| ||||||||||| ||| |||||| ||| ||||||||| ||||    
T  52594629 ttcaaatctaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 52594572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 368133 - 368249
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgata-acatttatttatcattctctgcaaaaa-tactctatcaaa 236  Q
    ||||||||| |||| ||| ||||||||||| | | |||||| |||||||| |||| |||  |||| ||||||||||||||  ||||| |||||| | |||    
T  368133 tcttcaaatttaatttatgttgttataatatttttaaaattaaaaatatagtaatcatatgcattaatttatcattctctaaaaaaactactcttttaaa 368232  T
Q  237 acctatgaaagatttct 253  Q
    |  | ||||||||||||    
T  368233 atttttgaaagatttct 368249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 34236528 - 34236476
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 193  Q
    ||||||| |||| ||||| ||||||||| ||| |||||| |||||||||||||    
T  34236528 ttcaaatttaatctatatagttataatattcttaaaattaaaaatatattaat 34236476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 42649888 - 42649979
Alignment:
Q  129 ttagataaactcttcaaatctaatatatattgttataata--ctctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 217  Q
    ||||||||| | |||||||| ||| ||  |||||||||||  ||||||||||| ||||||| ||||| || | |||| ||||||||||||||    
T  42649888 ttagataaaattttcaaatccaatctaagttgttataatactctctcaaaattaaaaatatgttaatcatgagcattcatttatcattctct 42649979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 56439388 - 56439299
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatga-taacatttatttatcattctct 217  Q
    ||||||||||| ||||||||| |||| | |  | |||||||| | | |||||| ||||||||||||||| ||||||| || |||||||||||    
T  56439388 gtttagataaattcttcaaatataatctgt--tattataatattataaaaattaaaaatatattaatgattaacattcatctatcattctct 56439299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 46891451 - 46891577
Alignment:
Q  128 tttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaata 226  Q
    |||| ||||| ||||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||  ||| |||||||| |||||  |||||||    
T  46891451 tttatataaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataagtattaatttatcagtctctaaaaaaata 46891550  T
Q  227 ctctatcaaaacctatgaaagatttct 253  Q
     ||| ||||||  ||||||||||||||    
T  46891551 atctttcaaaaaatatgaaagatttct 46891577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 42157813 - 42157724
Alignment:
Q  149 taatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||| ||| |||||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||  ||||| ||||||    
T  42157813 taatctatgttgttataatactctcaaaattaaaaatatatgaatgataaacattcatttatcattctctgcaaaagcactctttcaaaa 42157724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 4247172 - 4247306
Alignment:
Q  119 ttttagat-gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctc 216  Q
    |||||||| ||||| || || ||||||||| |||| ||| | ||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||||||||    
T  4247172 ttttagatagtttacatgaattcttcaaatttaatctatttagttataatattcttaaaattaaaaatatattaatcataagcattaatttatcattctc 4247271  T
Q  217 tgcaaaaatactctatcaaaacctatgaaagattt 251  Q
    |  |||| |||||| | ||||  ||||||||||||    
T  4247272 taaaaaattactctttaaaaaaatatgaaagattt 4247306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 38401930 - 38401865
Alignment:
Q  133 ataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||| ||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||| ||||    
T  38401930 ataaattcttcaaatttaatatatattattataatattctcaaaatttaaaatatattaattataa 38401865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 48444584 - 48444673
Alignment:
Q  142 tcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactct 230  Q
    |||||| |||||||||||||||||||| | | |||||| ||||||||||||| || |||||| |||||||| |||||  |||||||||||    
T  48444584 tcaaatttaatatatattgttataatatttttaaaattaaaaatatattaatcataaacattgatttatcactctctaaaaaaatactct 48444673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 3333940 - 3334055
Alignment:
Q  139 tcttcaaatctaatatatatt-gttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaa 236  Q
    ||||||||| |||||||| || ||||||||| ||| |||||||||||| ||||||| |||| |||| ||||||||||||||  |||||||||||  ||||    
T  3333940 tcttcaaatttaatatatttttgttataatattcttaaaattgaaaat-tattaatcataaacattaatttatcattctctaaaaaaatactcttccaaa 3334038  T
Q  237 acctatgaaagatttct 253  Q
    |  | ||||||||||||    
T  3334039 aaatgtgaaagatttct 3334055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 13638502 - 13638581
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 217  Q
    ||||||||| |||| ||||| ||||||||| ||| |||||| ||||||||||||| |||| |||| ||||||||||||||    
T  13638502 tcttcaaatttaatctatatagttataatattcttaaaattaaaaatatattaatcataagcattaatttatcattctct 13638581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 21777305 - 21777209
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaa 224  Q
    ||||||||||| |||||||||||||| ||  |||||||||||  | ||||||   ||||||||||||||| |||||| |||||||||||||| ||||||    
T  21777305 gtttagataaattcttcaaatctaatctaccttgttataata--cacaaaataagaaatatattaatgataaacattcatttatcattctctacaaaaa 21777209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 11500177 - 11500257
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaatt-gaaaatatattaatgat-aacatttatttatcattctct 217  Q
    ||||||||| |||||||| ||||||||||| ||| ||||||  ||||||||||||| || |||||| ||||||||||||||    
T  11500177 tcttcaaatttaatatatgttgttataatattcttaaaattaaaaaatatattaattataaacattaatttatcattctct 11500257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 252
Target Start/End: Complemental strand, 32721084 - 32720973
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacc 239  Q
    ||||||| |||||||| |||| |||||| | | |||||| ||||||||||||| |||| |||| |||||||| ||||| |||||||||||| |||| |      
T  32721084 ttcaaatttaatatatgttgtaataatatttt-aaaattaaaaatatattaatcataagcattaatttatcactctctacaaaaatactctttcaataaa 32720986  T
Q  240 tatgaaagatttc 252  Q
    | |||||||||||    
T  32720985 tgtgaaagatttc 32720973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 23613186 - 23613120
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 193  Q
    ||||||||||| | |||||||| ||| ||| || ||||||||||||||||||| ||||||| |||||    
T  23613186 gtttagataaattattcaaatccaatctatgttattataatactctcaaaatttaaaatattttaat 23613120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 44979477 - 44979558
Alignment:
Q  143 caaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaa 223  Q
    |||||| ||||||| ||||||||||||| |||||||| |||||  |||||| |||| || | |||||||||||||| |||||    
T  44979477 caaatccaatatatgttgttataatactttcaaaattaaaaattcattaatcataagcaataatttatcattctctacaaaa 44979558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 19148244 - 19148316
Alignment:
Q  140 cttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatca 211  Q
    |||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| ||||||||    
T  19148244 cttcaaatttaatttatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatca 19148316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 52620840 - 52620764
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattc 214  Q
    ||||||||| |||||||| ||||||||||| | | |||||  ||||||||||||| |||| |||| |||||||||||    
T  52620840 tcttcaaatttaatatatgttgttataatatttttaaaataaaaaatatattaatcataagcattgatttatcattc 52620764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 7302160 - 7302239
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 217  Q
    ||||||||| |||| ||||| ||||||||| ||| |||| | ||||||||||||| ||||  ||| ||||||||||||||    
T  7302160 tcttcaaatttaatctatatagttataatattcttaaaactaaaaatatattaatcataagtattgatttatcattctct 7302239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 35283163 - 35283278
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||||| || |||||||| ||||||||||| ||| |||||| ||||||||||| | ||||  ||| |||||||| |||    ||||||||||| ||||||    
T  35283163 tcttcatatttaatatatgttgttataatattcttaaaattaaaaatatattagtcataagaattaatttatcactctaaaaaaaaatactctttcaaaa 35283262  T
Q  238 cctatgaaagatttct 253  Q
      | ||||||||||||    
T  35283263 aatgtgaaagatttct 35283278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 44401141 - 44401204
Alignment:
Q  129 ttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaa 192  Q
    |||| |||| |||||||||| |||| || ||||||||||| ||| |||||||| ||||||||||    
T  44401141 ttagttaaattcttcaaatccaatacatgttgttataataatcttaaaattgataatatattaa 44401204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 40674183 - 40674237
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 193  Q
    |||| |||| |||||||| ||||||||||| ||| |||||| |||||||||||||    
T  40674183 tctttaaatttaatatatgttgttataatattcttaaaattaaaaatatattaat 40674237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 1132940 - 1132827
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||| |||| |||| ||| | ||| ||||| ||| |||||| ||||||||||||  || |||||| ||||||||||||||  |||| |||||| ||||||    
T  1132940 tctttaaatttaatctatgtagttgtaatattcttaaaattaaaaatatattaaccatgaacattaatttatcattctctaaaaaattactctttcaaaa 1132841  T
Q  238 cctatgaaagattt 251  Q
      | ||||||||||    
T  1132840 aatgtgaaagattt 1132827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 2927930 - 2927979
Alignment:
Q  149 taatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  2927930 taatatatgttgttataatattcttaaaattaaaaatatattaatcataa 2927979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 39966881 - 39966824
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||| |||||||| ||||||||||| | | |||||| ||||||||||||| ||||    
T  39966881 ttcaaatttaatatatgttgttataatatttttaaaattaaaaatatattaataataa 39966824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 53888563 - 53888616
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaa 192  Q
    ||||||||| |||||||| |||| |||||| ||| |||||| ||||||||||||    
T  53888563 tcttcaaatttaatatatgttgtaataatattcttaaaattaaaaatatattaa 53888616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 9241636 - 9241580
Alignment:
Q  158 ttgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcatt 213  Q
    ||||||||||| |||||| ||| ||||||||||||| ||||  ||||||||||||||    
T  9241636 ttgttataatattctcaagattaaaaatatattaatcataagtatttatttatcatt 9241580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 27922037 - 27922101
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacattt 203  Q
    ||||||||| |||| ||| ||||||||||| | | |||||| ||||||||||||| |||| ||||    
T  27922037 tcttcaaatttaatttatgttgttataatattttaaaaattaaaaatatattaatcataagattt 27922101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 42668130 - 42668206
Alignment:
Q  149 taatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaa 224  Q
    |||| ||| ||||||||||| |||||||||| ||||| ||  |||||| |||||| |||||||||| ||| ||||||    
T  42668130 taatctatgttgttataatattctcaaaattaaaaatgtaccaatgataaacattcatttatcattatctacaaaaa 42668206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 43530303 - 43530188
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||||||| ||||||||||||||| |||||| ||||||||||||| |||| |||| |||||||| |||||  ||||| ||||| | ||||    
T  43530303 tcttcaaatttaatatatgttgttataatactcttaaaattaaaaatatattaatcataagcattaatttatcactctctaaaaaaacactcttttaaaa 43530204  T
Q  238 cctatgaaagatttct 253  Q
      | ||||||||||||    
T  43530203 aatgtgaaagatttct 43530188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 6538020 - 6538088
Alignment:
Q  125 atgtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 193  Q
    ||||||| || |||||||||||| |||||||| ||||||||||| ||| |||||| |||||||||||||    
T  6538020 atgtttatatgaactcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaat 6538088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 32123533 - 32123624
Alignment:
Q  131 agataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaa 224  Q
    ||||||| |||||||||||||| |||   ||||||||| |||||||||| | |||||||||||||| |||||| |||||||||||| | ||||||    
T  32123533 agataaattcttcaaatctaatttat---gttataatattctcaaaattaacaatatattaatgataaacattcatttatcattctttacaaaaa 32123624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 49102977 - 49102865
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctctgcaaaaatactctatcaaaac 238  Q
    ||||||||| |||||||| ||| ||||||| ||| |||||| |||||||||| || |||| ||| ||||||||  ||||  ||||||||||| ||||||     
T  49102977 tcttcaaatttaatatatgttgctataatattcttaaaattaaaaatatattcatcataaaattaatttatca--ctctaaaaaaatactctttcaaaaa 49102880  T
Q  239 ctatgaaagatttct 253  Q
     | ||||||||||||    
T  49102879 atgtgaaagatttct 49102865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 35619519 - 35619406
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||||||| ||||||||||| ||| |||||| ||| ||||||||| || |||||| |||||||| |||||   |||||||| | | ||||    
T  35619519 tcttcaaatttaatatatgttgttataatattcttaaaattaaaagtatattaatcataaacattaatttatcactctctcataaaatactatttaaaaa 35619420  T
Q  238 cctatgaaagattt 251  Q
      ||||||||||||    
T  35619419 aatatgaaagattt 35619406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 6538098 - 6538178
Alignment:
Q  174 aaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttct 253  Q
    |||||| ||||||||||||| |||| |||| |||||||| |||||  ||||||||||| ||||||  ||||||||||||||    
T  6538098 aaaattaaaaatatattaattataaacattgatttatcactctctaaaaaaatactctttcaaaaaatatgaaagatttct 6538178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 43036328 - 43036236
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactct 230  Q
    ||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||||| ||||   || |||||||| |||||| |||||||||||    
T  43036328 tcttcaaatttaatctatgttgttataatattcttaaaattaaaaatatattaatcataagtcttaatttatcactctctgaaaaaatactct 43036236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 25561323 - 25561208
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||||||| || ||||| || ||| |||||| ||||||||||||| |||| |||| | |||||| || ||  ||||||||||| ||||||    
T  25561323 tcttcaaatttaatatatgttattatattattcttaaaattaaaaatatattaatcataagcattaacttatcactcgctaaaaaaatactctttcaaaa 25561224  T
Q  238 cctatgaaagatttct 253  Q
      | ||||||||||||    
T  25561223 aatgtgaaagatttct 25561208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 51572303 - 51572366
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatatt 190  Q
    ||||||||||| |||| |||| |||| ||| ||| |||||||||||||||||| ||||||||||    
T  51572303 gtttagataaattctttaaatttaatctatgttgctataatactctcaaaattaaaaatatatt 51572366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 19920970 - 19921023
Alignment:
Q  143 caaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat 196  Q
    |||||| |||||||||||||||||||||| ||||||| ||| || |||||||||    
T  19920970 caaatcaaatatatattgttataatactcacaaaattaaaagtacattaatgat 19921023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 34552093 - 34551980
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||| |||| |||| ||| ||||||||||| ||| |||||  ||||||||||||| |||| |||| |||||||| |||||  ||||||||  | ||||||    
T  34552093 tctttaaatttaatctatgttgttataatattcttaaaataaaaaatatattaatcataagcattgatttatcactctctagaaaaataccttttcaaaa 34551994  T
Q  238 cctatgaaagattt 251  Q
      ||||||||||||    
T  34551993 aatatgaaagattt 34551980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 48432724 - 48432760
Alignment:
Q  162 tataatactctcaaaattgaaaatatattaatgataa 198  Q
    |||||||||||||||||||||||||||||||| ||||    
T  48432724 tataatactctcaaaattgaaaatatattaatcataa 48432760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 29739214 - 29739163
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaat 178  Q
    ||||||||||| |||||||||||||||||| |||||||| || | |||||||    
T  29739214 gtttagataaattcttcaaatctaatatatgttgttatagtattatcaaaat 29739163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 30543368 - 30543289
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 217  Q
    ||||||||| |||| ||||| ||||| ||| ||| |||||| ||||||||||||| ||||  ||| ||||||||||||||    
T  30543368 tcttcaaatttaatctatatagttatgatattcttaaaattaaaaatatattaatcataagtattaatttatcattctct 30543289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 33579329 - 33579428
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||| || ||  |||||||| ||| |||||| ||||||||||| | |||| |||| ||||||||||||||  |||| |||||| ||||||    
T  33579329 tcttcaaatttaatctaaataattataatattcttaaaattaaaaatatattagtcataagcattaatttatcattctctaaaaaattactctttcaaaa 33579428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 24436935 - 24436845
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat-gataacatttatttatcattctctgcaaaaatactct 230  Q
    ||||||| |||| ||| ||||||||||||| | |||||| |||||||||||||  | |||||| |||||||| |||||  |||||| ||||    
T  24436935 ttcaaatttaatctatgttgttataatacttttaaaattaaaaatatattaatcaaaaacattaatttatcactctctaaaaaaattctct 24436845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 40136193 - 40136131
Alignment:
Q  175 aaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaa 236  Q
    ||||| ||||| ||||||| |||| |||| |||||||||||||| |||||||||||| |||||    
T  40136193 aaattaaaaatctattaatcataaacattaatttatcattctctacaaaaatactctctcaaa 40136131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 45752242 - 45752188
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 193  Q
    ||||||||| |||||||| ||||||||| | || ||||||| |||||||||||||    
T  45752242 tcttcaaatttaatatatgttgttataaaattcccaaaattaaaaatatattaat 45752188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 52073442 - 52073364
Alignment:
Q  160 gttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| ||| |||||| ||||||||||||| || ||| || ||||||||||||||  |||| |||||| ||||||    
T  52073442 gttataatattcttaaaattaaaaatatattaatcataaacgttaatttatcattctctaaaaaattactctttcaaaa 52073364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 19652300 - 19652223
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattct 215  Q
    |||||| || |||| ||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| || |||||||||    
T  19652300 tcttcatatttaatctattttgttataatattcttaaaattaaaaatatattaataataagcattaatatatcattct 19652223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 23079852 - 23079929
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 217  Q
    |||||||||||| |||   ||||||||||| ||||| || |||||| |||||| ||||  ||||||||||||||||||    
T  23079852 ttcaaatctaatttatgccgttataatactttcaaagttaaaaatacattaatcataagtatttatttatcattctct 23079929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 50097716 - 50097805
Alignment:
Q  165 aatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttct 253  Q
    |||| ||| |||||| ||||||||||||| |||| || | |||||||| |||||  ||||||||||| ||||||  | ||||||||||||    
T  50097716 aatattcttaaaattaaaaatatattaatcataaacaataatttatcactctctaaaaaaatactctttcaaaaaatgtgaaagatttct 50097805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 6245070 - 6245126
Alignment:
Q  143 caaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataac 199  Q
    ||||| ||| |||||||||||||||| ||| ||| || | |||||||||||||||||    
T  6245070 caaatttaacatatattgttataatattcttaaagttaagaatatattaatgataac 6245126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 36668639 - 36668595
Alignment:
Q  154 tatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||||||||||| ||| |||||| ||||||||||||| ||||    
T  36668639 tatattgttataatattcttaaaattaaaaatatattaatcataa 36668595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 41432767 - 41432675
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactct 230  Q
    ||||||||| |||| ||| | ||||||||| ||| |||||| ||||||||||||| ||||  ||| |||||| |||||||  |||| ||||||    
T  41432767 tcttcaaatttaatctatgtagttataatattcttaaaattaaaaatatattaatcataagtattaatttattattctctaaaaaattactct 41432675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 44195924 - 44195976
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 193  Q
    |||||||| |||||||||||| |||||| || ||||||||||| || ||||||    
T  44195924 ttcaaatccaatatatattgtgataatattcacaaaattgaaagtacattaat 44195976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 44303788 - 44303840
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 193  Q
    |||||||| |||||||||||||||||||||| | ||||| ||| || ||||||    
T  44303788 ttcaaatccaatatatattgttataatactcgctaaattaaaagtacattaat 44303840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 33187852 - 33187753
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||| |||| |||| ||||||||  ||||   |||||||||| ||||||    
T  33187852 tcttcaaatataatatatattgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcaccctctaagaaaatactctttcaaaa 33187753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 38138007 - 38138119
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||| ||| ||||||||||| | |  ||||| ||||| ||||||| |||| |||| ||||||||||||||  ||||||||||||||||||    
T  38138007 tcttcaaatttaatctatgttgttataatatttttgaaattaaaaatgtattaatcataagcattaatttatcattctctaaaaaaatactctatcaaaa 38138106  T
Q  238 cctatgaaagatt 250  Q
      | |||||||||    
T  38138107 aatgtgaaagatt 38138119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 14676306 - 14676419
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||| ||| | ||||||||| ||| |||||||||||||||||||  |||| |||| ||||||||||| ||  |||| |||||| ||||||    
T  14676306 tcttcaaatttaatctatgtagttataatattcttaaaattgaaaatatattaaccataagcattaatttatcattccctaaaaaattactctttcaaaa 14676405  T
Q  238 cctatgaaagattt 251  Q
      | ||||||||||    
T  14676406 aatgtgaaagattt 14676419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 31770246 - 31770306
Alignment:
Q  170 tctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactc 229  Q
    ||||||||||  |||||||||||| |||| ||||||||||||||||||| |||||||||||    
T  31770246 tctcaaaattacaaatatattaatcataaacatttatttatcattctctacaaaaatactc 31770306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 1278014 - 1278073
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  1278014 tcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 1278073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 44487338 - 44487227
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacc 239  Q
    ||||||| |||||||| |||||||| || ||| ||| || ||||||||||||  |||| |||| |||||||| |||||  ||||||||||||| ||||      
T  44487338 ttcaaatttaatatatgttgttatagtattcttaaagttaaaaatatattaaccataagcattaatttatcactctctaaaaaaatactctataaaaaaa 44487239  T
Q  240 tatgaaagattt 251  Q
    | ||||||||||    
T  44487238 tgtgaaagattt 44487227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 20513405 - 20513499
Alignment:
Q  160 gttataatactctcaaaattgaaaatatattaatgataac-atttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttct 253  Q
    ||||||||||| ||||| || |||||| |||||| ||||  |||||||||||||||||| |||||  | ||| ||||||| | ||||||||||||    
T  20513405 gttataatactttcaaagttaaaaatacattaatcataagtatttatttatcattctctacaaaaccattctctcaaaacttttgaaagatttct 20513499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 253
Target Start/End: Original strand, 46303332 - 46303439
Alignment:
Q  142 tcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctctgcaaaaatactctatcaaaaccta 241  Q
    |||||| |||||||| ||||||||||| ||| |||| | ||||||||||||| ||||     |||||||||||| |  ||||| ||||| ||||||  ||    
T  46303332 tcaaatttaatatatgttgttataatattctaaaaactaaaaatatattaatcataa----aatttatcattctttaaaaaaacactctttcaaaaaata 46303427  T
Q  242 tgaaagatttct 253  Q
    ||||||||||||    
T  46303428 tgaaagatttct 46303439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 12624379 - 12624326
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaa 192  Q
    ||||||||| |||||||||||||||||||| ||| |||||| ||||||| ||||    
T  12624379 tcttcaaatttaatatatattgttataatattcttaaaattaaaaatatgttaa 12624326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 12884737 - 12884694
Alignment:
Q  155 atattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||    
T  12884737 atattgttataatactctcaaaataaaaaatatattaatcataa 12884694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 13858417 - 13858484
Alignment:
Q  158 ttgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaa 224  Q
    |||||||||||||||||| ||| |||| |||||||| |||| |||| |||||||||| ||| ||||||    
T  13858417 ttgttataatactctcaatattaaaaacatattaatcataagcattcatttatcattatctacaaaaa 13858484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 17818350 - 17818441
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgata-acatttatttatcattctct 217  Q
    |||||||| || ||||||||| |||| ||| |||||||| || | | |||||| |||||||| |||| ||| ||||| ||||||||||||||    
T  17818350 gtttagatgaattcttcaaatttaatctatgttgttatagtatttttaaaattaaaaatatagtaattatatacattaatttatcattctct 17818441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 22556689 - 22556594
Alignment:
Q  159 tgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttct 253  Q
    |||||||||| ||| |||||| ||||||||||||| |||| ||||  ||||||| |||||  ||||||||||| | ||||  | ||||||||||||    
T  22556689 tgttataatattcttaaaattaaaaatatattaatcataagcattagtttatcactctctaaaaaaatactcttttaaaaaatgtgaaagatttct 22556594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 45471898 - 45471863
Alignment:
Q  163 ataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||||||||||||| ||||||||||||||||||    
T  45471898 ataatactctcaaaattaaaaatatattaatgataa 45471863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 4787998 - 4787908
Alignment:
Q  149 taatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaa-tactctatcaaaa 237  Q
    |||||||| ||||||||||| | | |||||| ||||||||||||| |||| |||| |||||||| |||||  ||||| |||||| ||||||    
T  4787998 taatatatgttgttataatatttttaaaattaaaaatatattaatcataagcattaatttatcactctctaaaaaaattactctttcaaaa 4787908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 42267011 - 42266933
Alignment:
Q  140 cttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 217  Q
    |||||||| |||| ||| ||||||||||| ||| |||||| |||||||| |||  |||| |||| ||||||||||||||    
T  42267011 cttcaaatttaatctatgttgttataatattcttaaaattaaaaatatagtaaacataagcattaatttatcattctct 42266933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 21687497 - 21687562
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaa 192  Q
    ||||| ||||| ||||||||| |||||||  ||||||||||| | | |||||| ||||||||||||    
T  21687497 gtttatataaattcttcaaatttaatataagttgttataatatttttaaaattaaaaatatattaa 21687562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 22394230 - 22394287
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||| |||||||  ||||||||| | ||| |||||||||||||||||||| ||||    
T  22394230 ttcaaatttaatatactttgttataaaattcttaaaattgaaaatatattaatcataa 22394287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 38991476 - 38991399
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 217  Q
    ||||||| |||||||| || |||||||| ||| |||||  ||||||||||||| || ||| || ||||||||||||||    
T  38991476 ttcaaatttaatatatgttattataatattcttaaaataaaaaatatattaattataaactttaatttatcattctct 38991399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 13044223 - 13044315
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactct 230  Q
    ||||||||| |||||||| |||||||| || | | |||||| |||||||| |||| |||  |||| ||||||||||||||  |||| ||||||    
T  13044223 tcttcaaatttaatatatgttgttatattatttttaaaattaaaaatatagtaatcatatgcattaatttatcattctctaaaaaactactct 13044315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 45510418 - 45510510
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactct 230  Q
    ||||||||| |||| ||  | ||||||||| | | |||||| ||||||||||||| || |||||| ||||||||||||||  |||| ||||||    
T  45510418 tcttcaaatttaatctaagtagttataatatttttaaaatttaaaatatattaatcataaacattaatttatcattctctaaaaaattactct 45510510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 2502371 - 2502292
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 217  Q
    ||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||| |||||    
T  2502371 tcttcaaatttaatatatattgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcactctct 2502292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 8439400 - 8439286
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||| ||| || |||||||| | | |||||| ||||||||||||| || |||||| ||||||||||||||  ||||||||| | ||||||    
T  8439400 tcttcaaatttaatctatgtttttataatattgttaaaattaaaaatatattaatcataaacattaatttatcattctct-aaaaaatactttttcaaaa 8439302  T
Q  238 cctatgaaagatttct 253  Q
      ||| ||||||||||    
T  8439301 aatataaaagatttct 8439286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 22817344 - 22817254
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactct 230  Q
    ||||||| ||||| || || |||||||| ||| |||||| ||||||||||||| |||| |||| |||||||||||| |  |||||||||||    
T  22817344 ttcaaatttaatacatgttattataatattcttaaaattaaaaatatattaatcataagcattcatttatcattctttataaaaatactct 22817254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 29054592 - 29054722
Alignment:
Q  89 gaggaactaaaaaattgtatcgaatgaagattttaga-tgtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatat 187  Q
    |||||||||||||||||||| |||||| |||||| ||  ||||| || || | ||||||| |||| ||||| ||||||||| | | |||||  |||||||    
T  29054592 gaggaactaaaaaattgtattgaatgaggatttttgagggtttatatgaatttttcaaatttaatctatatggttataatattattaaaataaaaaatat 29054691  T
Q  188 attaatgata-acatttatttatcattctct 217  Q
    | |||| ||| | ||| ||||||||||||||    
T  29054692 agtaatcatatatattaatttatcattctct 29054722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 4089402 - 4089303
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||||||| |||| |||||| | | ||||||||||||||||||||  |||  ||| |||||||| | |||  ||||||||||| ||||||    
T  4089402 tcttcaaatttaatatatgttgtcataatatttttaaaattgaaaatatattaatcgtaagtattaatttatcactatctagaaaaatactctttcaaaa 4089303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 6026249 - 6026324
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattct 215  Q
    |||||||| ||| ||||||||||||||| | ||||| || |||||| |||||| ||||  ||||||||||||||||    
T  6026249 ttcaaatccaatctatattgttataatattttcaaagttaaaaatacattaatcataagtatttatttatcattct 6026324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 13120427 - 13120328
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgata-acatttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||||||||  ||| ||| ||||||||||| | | |||||| ||||||||||||| |||  |||| ||||||||||||||  |||| |||||| ||||||    
T  13120427 tcttcaaattcaatctatgttgttataatattgttaaaattaaaaatatattaattatactcattaatttatcattctctaaaaaattactctttcaaaa 13120328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 33184278 - 33184357
Alignment:
Q  175 aaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttct 253  Q
    ||||| ||||||||||| | |||| |||| |||||||| |||||  ||||||||||| ||||||  ||||||||||||||    
T  33184278 aaattaaaaatatattagttataaacattaatttatcactctctaaaaaaatactctttcaaaaaatatgaaagatttct 33184357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 33677118 - 33677195
Alignment:
Q  158 ttgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||| |||||   |||||||||| ||||||    
T  33677118 ttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcactctct---aaaatactctttcaaaa 33677195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 33939107 - 33939049
Alignment:
Q  160 gttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 217  Q
    ||||||||| ||| |||||| ||||||||||||| || |||||| ||||||||||||||    
T  33939107 gttataatattcttaaaattaaaaatatattaatcataaacattaatttatcattctct 33939049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 6695418 - 6695487
Alignment:
Q  185 tatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttct 253  Q
    ||||||||| |||| |||| ||||||||||||||  ||||||||||| ||||||  ||||||| ||||||    
T  6695418 tatattaattataagcattcatttatcattctctaaaaaaatactctttcaaaaagtatgaaaaatttct 6695487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 26683393 - 26683505
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||| |||||  |||||| | ||| |||||| ||||||||||||| | || |||| |||||||||||||   |||| |||||| ||||||    
T  26683393 tcttcaaatttaatttatataattataaaattcttaaaattaaaaatatattaatcacaagcattaatttatcattctc-aaaaaattactctttcaaaa 26683491  T
Q  238 cctatgaaagattt 251  Q
      ||||||||||||    
T  26683492 aatatgaaagattt 26683505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 19477332 - 19477424
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactct 230  Q
    ||||||||| |||| ||| ||||||||||| | | |||||| || ||||| |||| |||  |||| ||||||||||||||| |||| ||||||    
T  19477332 tcttcaaatttaatctatgttgttataatatttttaaaattaaatatatagtaatcatatgcattaatttatcattctctgaaaaattactct 19477424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 20381871 - 20381799
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatc 210  Q
    ||||||| | |||||||| ||||||||||| ||| |||||| ||||||||| ||| |||| |||| |||||||    
T  20381871 tcttcaattttaatatatgttgttataatattcttaaaattaaaaatatatcaatcataatcattaatttatc 20381799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 26289627 - 26289715
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaata 226  Q
    ||||||||| |||| ||| |||||||| || | | |||||| |||||||| |||| |||  |||| |||||||||||||| ||||||||    
T  26289627 tcttcaaatttaatctatgttgttatattatttttaaaattaaaaatatagtaatcatatgcattaatttatcattctctacaaaaata 26289715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 13258562 - 13258676
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||||||||| ||| ||| || ||| |||||||| |||||| |||||||||||||  ||| |||| ||||||||||||||  ||||||||||| ||||||    
T  13258562 tcttcaaatccaatctatgttcttagaatactcttaaaattaaaaatatattaatcgtaagcattaatttatcattctctaaaaaaatactctttcaaaa 13258661  T
Q  238 cctatgaaagatttc 252  Q
      | |||||||||||    
T  13258662 aatgtgaaagatttc 13258676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 1839825 - 1839710
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgata-acatttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||||||| ||||||||||| | | |||||| || ||||||||||||||   ||| |||||||| |||||  ||||||||||| ||||||    
T  1839825 tcttcaaatttaatatatgttgttataatatttttaaaattaaacatatattaatgatatgtattaatttatcactctctaaaaaaatactctttcaaaa 1839726  T
Q  238 cctatgaaagatttct 253  Q
      | ||||||||||||    
T  1839725 aatgtgaaagatttct 1839710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 32502927 - 32503007
Alignment:
Q  157 attgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||| |||||||||||||||||| ||||||||||||| || |||||||| |||||||||||| ||||| |||| | ||||||    
T  32502927 attggtataatactctcaaaattaaaaatatattaataataaacattta-ttatcattctctacaaaattactatttcaaaa 32503007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 2457878 - 2457830
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatat 189  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  2457878 ttcaaatccaatctatgttgttataatactctcaaaattgaaaatatat 2457830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 10878787 - 10878691
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||||| || |||||||| ||||||||||| | | |||||| ||||||||||||| |||  ||| |||||||| |||||  ||||||||||| ||||||    
T  10878787 tcttcacatttaatatatgttgttataatatttttaaaattaaaaatatattaatcata--attaatttatcactctctaaaaaaatactctttcaaaa 10878691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 35856535 - 35856436
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||||||||| ||| ||||||||||||||| ||| | |||| |||||||||| || || || ||| | ||||||||||||  ||||||||||| ||||||    
T  35856535 tcttcaaatcaaatctatattgttataatattcttataattaaaaatatattcatcataaatattaacttatcattctctaaaaaaatactctttcaaaa 35856436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 41455335 - 41455394
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  41455335 tcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 41455394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 11961532 - 11961467
Alignment:
Q  133 ataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||| ||||||||| |||| ||| | ||||||||||||| |||||| ||||||||||||| ||||    
T  11961532 ataaattcttcaaatttaatttatgtagttataatactctgaaaattaaaaatatattaataataa 11961467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 27085424 - 27085540
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct-gcaaaaatactctatcaaa 236  Q
    ||||||||| |||||||| ||||||||||| | |  ||||| ||||||||||||| |||| |||| |||||||| |||||   ||||||||||| ||||     
T  27085424 tcttcaaatttaatatatgttgttataatattttttaaattaaaaatatattaatcataagcattaatttatcactctctaaaaaaaatactctttcaac 27085523  T
Q  237 acctatgaaagatttct 253  Q
    |  | ||||||||||||    
T  27085524 aaatgtgaaagatttct 27085540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 28517264 - 28517196
Alignment:
Q  140 cttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttattta 208  Q
    |||||||| |||||||| | ||||||||| ||| |||||| ||||||||||||| | |||||| |||||    
T  28517264 cttcaaatttaatatatgtagttataatattcttaaaattaaaaatatattaatcaaaacattaattta 28517196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 32229 - 32288
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  32229 tcttcaaatgtaatttatgttgttataatattcttaaaattaaaaatatattaatcataa 32288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 16424214 - 16424273
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    ||||||||| |||||||| | ||||||||| ||| |||||| ||||||||||||| ||||    
T  16424214 tcttcaaatttaatatatgtagttataatattcttaaaattaaaaatatattaattataa 16424273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 40985079 - 40985000
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 217  Q
    ||||||||| |||| ||||| |||||| || | | |||||| ||||||||||||| || |||||| ||||||||||||||    
T  40985079 tcttcaaatttaatttatatagttatagtattattaaaattaaaaatatattaatcataaacattaatttatcattctct 40985000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 10255602 - 10255513
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattg-aaaatatattaatgataaca-tttatttatcattctctgcaaaaata 226  Q
    ||||||||| |||| ||  ||||||||||| ||| ||||||| ||||||||||||| |||| | || |||||| ||||||| ||||||||    
T  10255602 tcttcaaatttaatttaatttgttataatattcttaaaattgaaaaatatattaattataaaagttaatttatgattctctacaaaaata 10255513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 13537440 - 13537517
Alignment:
Q  161 ttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||||||| ||| |||||| ||||||||||||| |||| |||| |||||| |||||||  |||| |||||| ||||||    
T  13537440 ttataatattcttaaaattaaaaatatattaatcataagcattaatttattattctctaaaaaattactctttcaaaa 13537517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 13626988 - 13627065
Alignment:
Q  161 ttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||||||| ||| |||||| ||||||||||||| |||| |||| |||||| |||||||  |||| |||||| ||||||    
T  13626988 ttataatattcttaaaattaaaaatatattaatcataagcattaatttattattctctaaaaaattactctttcaaaa 13627065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 43007776 - 43007853
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 217  Q
    ||||||| |||| ||| ||||||||||| |||||||||| |||||| | |||| || ||| || ||||||||||||||    
T  43007776 ttcaaatttaatctatgttgttataatattctcaaaattaaaaatagagtaatcataaaccttaatttatcattctct 43007853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 8948701 - 8948817
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct-gcaaaaatactctatcaaa 236  Q
    ||||||||| |||||||| ||||||||||| ||  |||||| |||| |||||||| || |||||| ||| |||| |||||   ||||||||||  |||||    
T  8948701 tcttcaaatttaatatatgttgttataatattcataaaattaaaaacatattaatcataaacattaattgatcactctctaaaaaaaatactccttcaaa 8948800  T
Q  237 acctatgaaagatttct 253  Q
    |  | ||||||||||||    
T  8948801 atatgtgaaagatttct 8948817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 31632907 - 31633023
Alignment:
Q  133 ataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactcta 231  Q
    ||||| |||||||||| ||| ||| ||||||||||    |||||||| ||||||||||||| | || |||| |||||||||||||| ||||||||||||     
T  31632907 ataaattcttcaaatccaatctatgttgttataatg---tcaaaattaaaaatatattaatcagaagcattcatttatcattctctacaaaaatactctt 31633003  T
Q  232 tcaaaacctatgaaagattt 251  Q
    ||||||  | ||||||||||    
T  31633004 tcaaaaaatgtgaaagattt 31633023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 4841714 - 4841599
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||||||||  ||||||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||| ||| |  ||||||||||| | ||||    
T  4841714 tcttcaaattgaatatatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcactctataaaaaaatactctttaaaaa 4841615  T
Q  238 cctatgaaagatttct 253  Q
      | ||||||||||||    
T  4841614 aatgtgaaagatttct 4841599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 7398785 - 7398707
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctct 217  Q
    |||||||||||||||||| | ||||||||||||| ||||||  |||||||| | | ||| |||| ||||||||||||||    
T  7398785 tcttcaaatctaatatatgtagttataatactcttaaaattacaaatatatcagtcatagcattaatttatcattctct 7398707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 251
Target Start/End: Complemental strand, 19389882 - 19389720
Alignment:
Q  91 ggaactaaaaaattgtatcgaatgaagattttagatg-tttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatat 189  Q
    |||||||||||||||||| | | || |||||| || | |||| || || ||||||||| |||| ||| | ||||||||| | | |||||| |||||||||    
T  19389882 ggaactaaaaaattgtattggaggaggattttggagggtttacatgaattcttcaaatttaatctatgtagttataatatttttaaaattaaaaatatat 19389783  T
Q  190 taatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagattt 251  Q
    |||| |||| |||| ||||||||||||||  |||| || ||| ||||||  | ||||||||||    
T  19389782 taatcataagcattaatttatcattctctaaaaaattaatctttcaaaaattgtgaaagattt 19389720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 1475027 - 1474942
Alignment:
Q  133 ataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 217  Q
    ||||| |||| ||||||||||||| ||||||||||||||| || ||| | ||||||||| || | |||||| ||||||||||||||    
T  1475027 ataaattctttaaatctaatatatgttgttataatactcttaacattaacaatatattagtggtaaacattcatttatcattctct 1474942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 1935112 - 1935039
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatca 211  Q
    ||||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| ||||||||    
T  1935112 tcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatca 1935039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 17668139 - 17668026
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    ||||||||| |||| ||| | ||||||||| ||| |||||||||||||||||||  |||| |||| ||||||||||| ||  |||| |||||| ||||||    
T  17668139 tcttcaaatttaatctatgtagttataatattcttaaaattgaaaatatattaagcataagcattaatttatcattccctaaaaaattactctttcaaaa 17668040  T
Q  238 cctatgaaagattt 251  Q
      | ||||||||||    
T  17668039 aatgtgaaagattt 17668026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 26018819 - 26018896
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 217  Q
    ||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||| |||||    
T  26018819 ttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcactctct 26018896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 37909067 - 37909158
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactct 230  Q
    |||||||||  ||| ||||||||||||||||||| |||||| ||||| ||| ||| || |||||| ||||||||||||||  |||||||||||    
T  37909067 tcttcaaattcaatctatattgttataatactcttaaaattaaaaatttatcaattataaacattaatttatcattctct-aaaaaatactct 37909158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 6491260 - 6491339
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 217  Q
    ||||||||| |||  ||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| ||||||||||||||    
T  6491260 tcttcaaatttaacttatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcattctct 6491339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 9684796 - 9684697
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||||||||||||| ||  | ||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||||| |||  |||| |||||| ||||||    
T  9684796 tcttcaaatctaatctaagtagttataatattcttaaaattaaaaatatattaatcataagcattaatttatcattttctaaaaaattactctttcaaaa 9684697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 15917527 - 15917583
Alignment:
Q  197 aacatttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttct 253  Q
    |||||| |||||||| ||||| |||||||||||| ||||||  ||||||||||||||    
T  15917527 aacattaatttatcactctctacaaaaatactctttcaaaaaatatgaaagatttct 15917583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 29799701 - 29799785
Alignment:
Q  127 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatc 210  Q
    ||||| ||||| ||||||||| |||||||| || |||||||| | | |||||| ||||||||||||| |||| |||| |||||||    
T  29799701 gtttatataaattcttcaaatttaatatatgttattataatatttttaaaattaaaaatatattaatcataagcattaatttatc 29799785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 3081337 - 3081238
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 237  Q
    |||| |||| |||||||| || |||||||| ||| |||||| ||||||||||||| |||| |||  |||||||| |||||  ||||||||| | ||||||    
T  3081337 tctttaaatttaatatatgttcttataatattcttaaaattaaaaatatattaatcataagcatcaatttatcactctctcaaaaaatactatttcaaaa 3081238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 25779571 - 25779650
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 217  Q
    ||||||||  |||||||| ||||||||||| ||| |||||| |||||||| |||| || || ||| ||||||||||||||    
T  25779571 tcttcaaaattaatatatgttgttataatattcttaaaattaaaaatataataattataaatattaatttatcattctct 25779650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 13839613 - 13839480
Alignment:
Q  91 ggaactaaaaaattgtatcgaatgaagattttagatg-tttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatat 189  Q
    |||||| |||||| |||| | | ||||||||| || | |||||||||  |||||||||| |||   | |||||||||||||||||||| | |||| ||||    
T  13839613 ggaactcaaaaatggtattgtacgaagattttggagggtttagataacttcttcaaatcaaatccgtgttgttataatactctcaaaaattaaaa-atat 13839515  T
Q  190 taatgat-aacatttatttatcattctctgcaaaa 223  Q
    |||| || || ||| |||||||||||||| |||||    
T  13839514 taatcataaatattcatttatcattctctacaaaa 13839480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 19338566 - 19338524
Alignment:
Q  150 aatatatattgttataatactctcaaaattgaaaatatattaa 192  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||    
T  19338566 aatatatattgttataatattcttaaaattaaaaatatattaa 19338524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 35708767 - 35708689
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctct 217  Q
    ||||||||| |||||||| |||||||| || | | |||||  ||||||||||||| ||| |||| |||||||| |||||    
T  35708767 tcttcaaatttaatatatgttgttatattatttttaaaatgaaaaatatattaatcatagcattaatttatcactctct 35708689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 43265237 - 43265307
Alignment:
Q  128 tttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    |||||||||| |||||||||| |||  || ||||||||||| ||| |||| | |||||||||||| |||||    
T  43265237 tttagataaattcttcaaatcaaattaatgttgttataataatctaaaaactaaaaatatattaacgataa 43265307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 6044609 - 6044698
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatac 227  Q
    ||||||||| |||| ||| ||||||||||| ||| || ||| ||||||||| ||||||||  |||  |||||||||||||  ||||||||    
T  6044609 tcttcaaatttaatttatgttgttataatattcttaatattaaaaatatatgaatgataagtattagtttatcattctctaaaaaaatac 6044698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 15916959 - 15917012
Alignment:
Q  139 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaa 192  Q
    |||| |||| |||||||| ||||||||||| ||| |||||| ||||||||||||    
T  15916959 tctttaaatttaatatatgttgttataatattcttaaaatttaaaatatattaa 15917012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 2561118 - 2561222
Alignment:
Q  88 ggaggaactaaaaaattgtatcgaatgaagattttagatgtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatat 187  Q
    |||||||||| ||||| |||| ||||||||||||| |  ||| | || || ||||||||| |||| ||| | |||||| || | | |||||| |||||||    
T  2561118 ggaggaactagaaaatagtattgaatgaagatttttggggttcacatgaattcttcaaatttaatctatgtagttatactattattaaaatttaaaatat 2561217  T
Q  188 attaa 192  Q
    |||||    
T  2561218 attaa 2561222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 28154785 - 28154845
Alignment:
Q  158 ttgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 217  Q
    ||||||||||| ||| |||||  ||||||||||||| || |||||| ||||||||||||||    
T  28154785 ttgttataatattcttaaaataaaaaatatattaatcataaacattaatttatcattctct 28154845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 1656 - 1713
Alignment:
Q  141 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 198  Q
    |||||||| ||| ||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  1656 ttcaaatccaatctatgttgttataatattcttaaaattaaaaatatattaatcataa 1713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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