View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_59 (Length: 245)
Name: NF19305_low_59
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37462805 - 37462584
Alignment:
| Q |
1 |
agttttggagtaagaaagtacctcagaaaagtaaataacaagccaccctgcaatacaaaaagcacttgacactctcattgcctgcatatatattccaaaa |
100 |
Q |
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| T |
37462805 |
agttttggagtaagaaagtacctcagaaaagtaaataacaagccaccctgcaatacaaaaagcacttgacactctcattgcctgcatatatattccaaaa |
37462706 |
T |
|
| Q |
101 |
caaacttttttatgtatattccacataataaagatgattaacaattcggaagttaattccaaaataactagcatcgttttcctgaaattaccccctttct |
200 |
Q |
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| T |
37462705 |
caaacttttt-atgaatattccacataataaagatgattaacaattcggaagttaattccaaaataactagcatcgttttcctgaaattaccccctttct |
37462607 |
T |
|
| Q |
201 |
tccaacgaaatcagcaataggtc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
37462606 |
tccaacgaaatcagcaataggtc |
37462584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 37591328 - 37591534
Alignment:
| Q |
20 |
acctcagaaaagtaaataacaagccaccctgcaatacaaaaagcacttgacactctcattgcctgcatatatattccaaaacaaacttttttatg---ta |
116 |
Q |
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| T |
37591328 |
acctcagaaaagtaaataacaagccaccctgcaatactgaaagcgcttgacactctcattgcctgcatatatgttgcaaaaccaactttttattgacctt |
37591427 |
T |
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| Q |
117 |
tattccacataataaagatgattaacaattcggaagttaattccaaaataactagcatcgttttcctgaaattaccccctttcttccaacgaaatcagca |
216 |
Q |
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| T |
37591428 |
gaataccctaaataaaaataattaaacatttggaagttaattccaaaacaaccatcataattttccagaaattaccccctttcgtccaacgaattcggca |
37591527 |
T |
|
| Q |
217 |
ataggtc |
223 |
Q |
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||||||| |
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| T |
37591528 |
ataggtc |
37591534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 37585243 - 37585153
Alignment:
| Q |
20 |
acctcagaaaagtaaataacaagccaccctgcaatacaaaaagcacttgacactctcattgcctgcatatatattccaaaacaaacttttt |
110 |
Q |
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|||| ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||| |||||| |||||||| |
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| T |
37585243 |
acctgagaaaagtaaataacaagccaccctacaatacagaaacagcttgacactctcattgcctgcatttatattgcaaaactaacttttt |
37585153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 37585084 - 37585038
Alignment:
| Q |
177 |
ttttcctgaaattaccccctttcttccaacgaaatcagcaataggtc |
223 |
Q |
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|||||||||| |||| ||||||| |||||||||||| |||||||||| |
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| T |
37585084 |
ttttcctgaatttactccctttcgtccaacgaaatcggcaataggtc |
37585038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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