View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19305_low_6 (Length: 733)

Name: NF19305_low_6
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19305_low_6
NF19305_low_6
[»] chr1 (3 HSPs)
chr1 (262-721)||(26833606-26834060)
chr1 (19-231)||(26834085-26834299)
chr1 (647-719)||(26786819-26786891)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 262 - 721
Target Start/End: Complemental strand, 26834060 - 26833606
Alignment:
Q  262 cagagcattcttatttctcacaatcacagtgccatagctcttacagaaactgaaacccgcaagcannnnnnnnnnnnnnnnnnnctttcatttttccaac 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||| |||||||||    
T  26834060 cagagcattcttatttctcacaatcacagtgccatagctcttacagaaactgaaacccgcaagcactctctctctctc------ctttcaattttccaac 26833967  T
Q  362 catttacctgctttgcattgtcattgttctgttctgtctctcttttctttttcattaaggaaccataacatgcttagatcttcaagcatatcaacgtttt 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26833966 catttacctgctttgcattgtcattgttctgttctgtctctcttttctttttcattaaggaaccataacatgcttagatcttcaagcatatcaacgtttt 26833867  T
Q  462 gttaatttttctacctcttccacagtttcttttctgcatga-ccctggaaacaaaaacaagtttttctccttttctttaagtaaagttggttaaatttat 560  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26833866 gttaatttttctacctctttcacagtttcttttctgcatgacccctggaaacaaaaacaagtttttctccttttctttaagtaaagttggttaaatttat 26833767  T
Q  561 tcnnnnnnncatttgaagtnnnnnnntgtatgcttttcaaggagcaaggaatggacttggtttacaactcgagtttcgttggagacaaatcagagagcca 660  Q
    ||       ||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  26833766 tcaaaaaaacatttgaagtaaaaaaatgtatgcttttcaaggagcaaggaatggacttggtttacaacacgagtttctttggagacaaatcagagagcca 26833667  T
Q  661 ttgatcgtgccattgctgagagttgcagtgtttctttgcctaggcatgtcgttgatgatgt 721  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26833666 ttgatcgtgccattgctgagagttgcagtgtttgtttgcctaggcatgtcgttgatgatgt 26833606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 26834299 - 26834085
Alignment:
Q  19 gatatcacagaggaaataccaatacttt--agcatagaaaattaaagataccaatgcaccaatgaaacaaatgtgttttaaaaaataaaacacctttggt 116  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||    
T  26834299 gatatcacagaggaaataccaatactttttagcatagaaaattaaagataccaat-----------acaaatgtgttttaaaaaataaaacacctttggt 26834211  T
Q  117 cattctattctatataaccatcatgctcactaatgtgattgcaacagtt-----------annnnnnntttatgaggcagtgatagttcagctaaatcca 205  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||                   |||||||||||||||||||||| |||||||||    
T  26834210 cattctattctatataaccatcatgctcactaatatgattgcaacagttgggggggggggggggggggtttatgaggcagtgatagttcaactaaatcca 26834111  T
Q  206 ctataaaaagcaaacaacgctttaat 231  Q
    ||||||||||||||||||||||||||    
T  26834110 ctataaaaagcaaacaacgctttaat 26834085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 647 - 719
Target Start/End: Complemental strand, 26786891 - 26786819
Alignment:
Q  647 aaatcagagagccattgatcgtgccattgctgagagttgcagtgtttctttgcctaggcatgtcgttgatgat 719  Q
    |||| ||||| || |||||||||||| ||||||||| |||||||||| | |||||| ||||||| ||||||||    
T  26786891 aaataagagaacctttgatcgtgccaatgctgagagctgcagtgtttatctgcctaagcatgtcattgatgat 26786819  T

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