View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19305_low_61 (Length: 239)
Name: NF19305_low_61
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_61 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15345026 - 15344800
Alignment:
| Q |
1 |
atcacaaattatcctatgaaaactatatcattttaagtcaacctatcgtgtaaaaattagataaccaaaacaatgaacaatgcgattacgcctgagtaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15345026 |
atcacaaattatcctatgaaaactatatcattttaagccaacctatcatgtaaaaattagataaccaaaacaatgaacaatgcgattacgcctgagtaaa |
15344927 |
T |
|
| Q |
101 |
tgcggttacgcctttgtaaaattatggttatatgctttagttaa----nnnnnnnnnngatcaagcaatgaaaagcattaaactgacaggattgggcctg |
196 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15344926 |
tgtggttacgcctttgtaaaattatggttatatgctttagttaatttttttttttatttatcaagcaatgaaaagcattaaactgacaggattgggcctg |
15344827 |
T |
|
| Q |
197 |
aacccttgacaaaagttatcacattac |
223 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
15344826 |
aacccttgtcaaaagttatcacattac |
15344800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 40504036 - 40503893
Alignment:
| Q |
1 |
atcacaaattatcctatgaaaactatatcattttaagtcaacctatcgtgtaaaaattagataaccaaaacaatgaacaatgcgattacgcctgagtaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40504036 |
atcacaaattatcctatgaaaactatatcattttaagccaacctatcatgtaaaaattagataaccaaaacaatgaacaatgcgattacgcctgagtaaa |
40503937 |
T |
|
| Q |
101 |
tgcggttacgcctttgtaaaattatggttatatgctttagttaa |
144 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40503936 |
tgtggttacgcctttgtaaaattatggttatatgcttcagttaa |
40503893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 22022615 - 22022663
Alignment:
| Q |
6 |
aaattatcctatgaaaactatatcattttaagtcaacctatcgtgtaaa |
54 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| |||| |||||| |
|
|
| T |
22022615 |
aaattatcctatgaaaaatatatcattttaagccaacttatcatgtaaa |
22022663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 24706461 - 24706604
Alignment:
| Q |
1 |
atcacaaattatcctatgaaaactatatcattttaagtcaacctatcgtgtaaaaattagataaccaaaacaatgaacaatgcgattacgcctgagtaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24706461 |
atcacaaattatcctatgaaaactatatccttttaagccaacctatcatgtaaaatttagataaccaaaacaatgaacaatgcgattacgcctgagtaaa |
24706560 |
T |
|
| Q |
101 |
tgcggttacgcctttgtaaaattatggttatatgctttagttaa |
144 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24706561 |
tgtggttacgcctttgtaaaattatggttatatgcttcagttaa |
24706604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 31045755 - 31045708
Alignment:
| Q |
156 |
atcaagcaatgaaaagcattaaactgacaggattgggcctgaaccctt |
203 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
31045755 |
atcaagcaatgaaaagcattaaactaacaggattgggcctcaaccctt |
31045708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University