View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_8 (Length: 667)
Name: NF19305_low_8
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 20 - 653
Target Start/End: Complemental strand, 1756152 - 1755513
Alignment:
| Q |
20 |
ttaaccttcttctacttccatcagcctgcaacaattgccataaaataagttctatttaaccaaaactaagaaaattggacttgaatgatatctacaatga |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1756152 |
ttaaccttcttctacttccatcagcctgcaacaattgccataaaattagttctatttaaccaaaactaagaaaattggacttgaatgatatctacaatga |
1756053 |
T |
|
| Q |
120 |
ctgctaataaagatagtaagacactttctgcactcagttttcaagcacacagaagaaattagaagaaacacagtattgataaaattgagctactattaag |
219 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1756052 |
ctgctaacaaagatagtaagacactttctgcactcagttttcaagcacacagaagaaattagaagaaacacagtattgataaaattgagctactattaag |
1755953 |
T |
|
| Q |
220 |
aatgttgtaaatctagatttcatttaccataggcctcattgcttcttacatctctgaagcagcgattcaagca------agatggtcgttccattgctca |
313 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
1755952 |
aatgttgtaaatctaaatttcatttaccataggcctcattgcttcttacatctctgaagcagcgattcaagcagagacaagatggccgttccattgctca |
1755853 |
T |
|
| Q |
314 |
ccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaaagtgacaggaaaatatgtgtgaagcaaagctggcgcaggccaaagggtattga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1755852 |
ccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaaagtgacaggaaaatatgtgtgaagcaaagctggcgcaggccaaagggtattga |
1755753 |
T |
|
| Q |
414 |
ttcacgagttaggagaaaattcaaagtagttactttgatgcccaacattggatacggctcagacaagaagacccgccactatttgcctaatggattcaag |
513 |
Q |
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| T |
1755752 |
ttcacaagttaggagaaaattcaagggagttactttgatgcccaatattggatacggctcagacaagaagacccgccactatttgcctaatggattcaag |
1755653 |
T |
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| Q |
514 |
aagtttgtcgtgcacaatgtccatgacctgtaacttttgatgatgcacagcaggacatactgtgctgagatcgcacacaatgtgtcaaccaagaaaagga |
613 |
Q |
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||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1755652 |
aagtttgtcgtgcacaatgtccaggacctggaacctttgatgatgcacaacaggacatactgtgctgagatcgcacacaatgtgtcaaccaggaaaagga |
1755553 |
T |
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| Q |
614 |
aggacattgttgaacgtgcagcacagttggatgttgttgt |
653 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
1755552 |
aggacattgttgaacgtgcagcacagttggatgttgttgt |
1755513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 383 - 567
Target Start/End: Original strand, 18705247 - 18705431
Alignment:
| Q |
383 |
agcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaagtagttactttgatgcccaacattggatacggctcagacaagaa |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18705247 |
agcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaaggagttactttgatgcccaatattggatacggctcagacaagaa |
18705346 |
T |
|
| Q |
483 |
gacccgccactatttgcctaatggattcaagaagtttgtcgtgcacaatgtccatgacctgtaacttttgatgatgcacagcagg |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| |
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| T |
18705347 |
gacccgccactatttgcctaatggattcaagaagtttgtcgtgcacaatgtccaagacctggaacttttgatgatgcacaacagg |
18705431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 291 - 384
Target Start/End: Original strand, 18704553 - 18704646
Alignment:
| Q |
291 |
caagatggtcgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaaagtgacaggaaaatatgtgtgaag |
384 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18704553 |
caagatggccgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaaagtgacaggaaaatatgtgtgaag |
18704646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 564 - 653
Target Start/End: Original strand, 18705515 - 18705604
Alignment:
| Q |
564 |
caggacatactgtgctgagatcgcacacaatgtgtcaaccaagaaaaggaaggacattgttgaacgtgcagcacagttggatgttgttgt |
653 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18705515 |
caggacatactgtgctgagatcgcacacaatgtgtcaaccaggaaaaggaaggacattgttgaacgtgcagcacagttggatgttgttgt |
18705604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 18703727 - 18703767
Alignment:
| Q |
252 |
gcctcattgcttcttacatctctgaagcagcgattcaagca |
292 |
Q |
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| T |
18703727 |
gcctcattgcttcttacatatctgaagcagcgattcaagca |
18703767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 6133583 - 6133813
Alignment:
| Q |
20 |
ttaaccttcttctacttccatcagcctgcaacaattgccataaaataagttctatttaaccaaaactaagaaaattggacttgaatgatatctacaatga |
119 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6133583 |
ttaaccttcttctccttccagaagcctgcaacaattgccataaaataagttctatttaaccaaaactaagaaaattggacttgaatgatatctacaatga |
6133682 |
T |
|
| Q |
120 |
ctgctaataaagatagtaagacactttctgcactcagttttcaagcacacagaagaaattagaagaaacacagtattgataaaattgagctactattaag |
219 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6133683 |
ctgctaacaaagatagtaagacactttctgcactcagttttcaagcacacagaagaaattagaagaaacatagtattgataaaattgagctactattaag |
6133782 |
T |
|
| Q |
220 |
aatgttgtaaatctagatttcatttaccata |
250 |
Q |
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||||||||||||||| ||||||||||||||| |
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| T |
6133783 |
aatgttgtaaatctaaatttcatttaccata |
6133813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 26946370 - 26946498
Alignment:
| Q |
20 |
ttaaccttcttctacttccatcagcctgcaacaattgccataaaataagttctatttaaccaaaactaagaaaattggacttgaatgatatctacaatga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
26946370 |
ttaaccttcttctacttccatcagcctgcaacaattgccataaaataagttctatttaacaaaaactaagaaaattggacttgaataatatctacaatga |
26946469 |
T |
|
| Q |
120 |
ctgctaataaagatagtaagacactttct |
148 |
Q |
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||||||| ||||||||||||||||||||| |
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| T |
26946470 |
ctgctaacaaagatagtaagacactttct |
26946498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 390 - 596
Target Start/End: Original strand, 35545581 - 35545787
Alignment:
| Q |
390 |
ctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaagtagttactttgatgcccaacattggatacggctcagacaagaagacccgc |
489 |
Q |
| |
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||||||||| |||||||||||||||||||| || |||||||| || || | | |||||||||||| || ||||| || || ||||| |||||||| | |
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| T |
35545581 |
ctggcgcagaccaaagggtattgattcacgtgtgaggagaaagtttaagggatgtactttgatgccaaatattgggtatggatcagataagaagactagg |
35545680 |
T |
|
| Q |
490 |
cactatttgcctaatggattcaagaagtttgtcgtgcacaatgtccatgacctgtaacttttgatgatgcacagcaggacatactgtgctgagatcgcac |
589 |
Q |
| |
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|| ||| | || ||||| || ||||| ||||| || |||||| |||| || | ||||| |||||||||| ||||| || ||||||||||| |||| |
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| T |
35545681 |
cattatctaccaaatggttttaagaaatttgttgtttgcaatgttaatgatttggagcttttaatgatgcacaataggacttattgtgctgagattgcac |
35545780 |
T |
|
| Q |
590 |
acaatgt |
596 |
Q |
| |
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||||||| |
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|
| T |
35545781 |
acaatgt |
35545787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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