View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19305_low_9 (Length: 646)
Name: NF19305_low_9
Description: NF19305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19305_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 591; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 12 - 633
Target Start/End: Complemental strand, 34695233 - 34694609
Alignment:
| Q |
12 |
atcatcaggtgcactcatgtcaatggccggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaaaattaagttgt |
111 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34695233 |
atcagcaggtgcactcatgtcaatggccggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaaaattaagttgt |
34695134 |
T |
|
| Q |
112 |
gggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttccat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34695133 |
gggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttccat |
34695034 |
T |
|
| Q |
212 |
agttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaaagattgactcatatttggaaaaccagagaagtaattaaacccctc |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34695033 |
agttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaaagattgactcatatttggaaaaccagagaagtaattaaacccctc |
34694934 |
T |
|
| Q |
312 |
tggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtgtaggtagttgtagaccggttccagtg |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694933 |
tggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtgtaggtagttgtagaccggttccagtg |
34694834 |
T |
|
| Q |
412 |
agggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcacggtcccatcattaatattggagattcc---aa |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
34694833 |
agggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcaccatcccatcattaatattggagattccaataa |
34694734 |
T |
|
| Q |
509 |
tattgttagaggaagataatgaagatgagttgggtggtggtgtggtgatttgtgggagagagctatttgaagctgctttttgttgtgttcccggtttctc |
608 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694733 |
tattgttagaggaagatgatgaagatgagttgggtggtggtgtgttgatttgtgggagagagctatttgaagctgctttttgttgtgttcccggtttctc |
34694634 |
T |
|
| Q |
609 |
gttatagggtactttgttggttttg |
633 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
34694633 |
gttatagggtactttgttggttttg |
34694609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 575
Target Start/End: Complemental strand, 34687306 - 34686741
Alignment:
| Q |
10 |
acatcatcaggtgcactcatgtcaatggccggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaaaattaagtt |
109 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |
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| T |
34687306 |
acatcaacaggtgcactcatgtcaatggccggaggtagaggagcaagatcagttgaat---catcattacttgaagttgtcgtgacaccaaaattaaatt |
34687210 |
T |
|
| Q |
110 |
gtgggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttcc |
209 |
Q |
| |
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||||||||||||| ||||| |||||||||| |||| |||||||||||||||||||||| |||||| |||| || |||| |||||||||||| ||| | |
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| T |
34687209 |
gtgggtcttgttggtgcatgtgcatcatattcatcgcttcctcttgaatattctcttgataaaaaagatcatggactgagtagattccattttcattttc |
34687110 |
T |
|
| Q |
210 |
atagttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaaagattgactcatatttggaaaaccagagaagtaattaaacccc |
309 |
Q |
| |
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|| ||||||||||||||||||||| || ||||||||||||||||||| ||||||| | | || | ||||||| || ||| |||||||||||||| ||||| |
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| T |
34687109 |
attgttcatgatgttatcataattcagcagaggcagatcaacattttgttgaggtgagggttcaatcatattcgggaaatcagagaagtaattagacccc |
34687010 |
T |
|
| Q |
310 |
tctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtgtaggtagttgtagaccggttccag |
409 |
Q |
| |
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||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
34687009 |
tctagtgttgtcatgtcattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcag |
34686910 |
T |
|
| Q |
410 |
tgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcacggtcccatcattaatattggagattcc--- |
506 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34686909 |
cgagggtgtcaggataagtatcatcttggttttggttcagagagattgcaggtgaattaggcaccatcaccgtcccatcattaatattggagattccaat |
34686810 |
T |
|
| Q |
507 |
aatattgttagaggaagataatgaagatgagttgggtggtggtgtggtgatttgtgggagagagctatt |
575 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34686809 |
aatattgttagaggaagatgatgaagatgagttgggtggtggtgtggtgatttgtgggagagagttatt |
34686741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 286 - 515
Target Start/End: Complemental strand, 8284906 - 8284680
Alignment:
| Q |
286 |
aaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtg |
385 |
Q |
| |
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|||||||| |||| |||||||| | ||| | | ||||| ||||| ||||||| || |||||||||||||| || ||||||||| |||||||||||| |
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| T |
8284906 |
aaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactac---ttcattaatatgattctgcacagggaaagagaaaaatgggggtg |
8284810 |
T |
|
| Q |
386 |
taggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcacggtccc |
485 |
Q |
| |
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|||||||||||| | |||||||||| |||| ||| ||||| |||| |||| |||||||||| || | |||||||||||||| | || ||| |||| |
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| T |
8284809 |
taggtagttgtaaatcggttccagtaggggtttgaaaataagcatcaacttggttttggttcaccgagactgcgggtgaattagaaaacaccaccatccc |
8284710 |
T |
|
| Q |
486 |
atcattaatattggagattccaatattgtt |
515 |
Q |
| |
|
||||||| |||||||| ||| |||||||| |
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| T |
8284709 |
atcattagcattggagaatccgatattgtt |
8284680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 40 - 266
Target Start/End: Complemental strand, 8285179 - 8284953
Alignment:
| Q |
40 |
ggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaaaattaagttgtgggtcttgttgatgcatatgcatcatat |
139 |
Q |
| |
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||||| ||||||||||||||| ||| | ||||||||| ||||| | ||| | |||||||||||||||||||||||||| || | ||| || ||||||| |
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| T |
8285179 |
ggaggaagaggagcaagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatat |
8285080 |
T |
|
| Q |
140 |
gaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttccatagttcatgatgttatcataattaagtag |
239 |
Q |
| |
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|| | ||||||||||| |||||||||||| | ||| ||| |||||| |||||| |||| |||||||||||||| || | |||| ||||| ||| |
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| T |
8285079 |
tcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactag |
8284980 |
T |
|
| Q |
240 |
aggcagatcaacattttcttgaggtaa |
266 |
Q |
| |
|
||| | ||||||||| | ||||||||| |
|
|
| T |
8284979 |
aggtacatcaacattctgttgaggtaa |
8284953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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