View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19306_high_1 (Length: 639)

Name: NF19306_high_1
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19306_high_1
NF19306_high_1
[»] chr3 (4 HSPs)
chr3 (20-569)||(25914928-25915477)
chr3 (20-473)||(25901006-25901459)
chr3 (589-634)||(25914862-25914907)
chr3 (116-203)||(12734787-12734874)
[»] chr4 (30 HSPs)
chr4 (20-453)||(10571023-10571456)
chr4 (20-453)||(10553293-10553726)
chr4 (84-208)||(8443446-8443570)
chr4 (20-204)||(10460515-10460699)
chr4 (20-208)||(10482071-10482259)
chr4 (19-200)||(6388129-6388310)
chr4 (22-208)||(8447646-8447832)
chr4 (128-208)||(837774-837854)
chr4 (315-473)||(10464472-10464630)
chr4 (79-199)||(6392770-6392893)
chr4 (79-208)||(10464218-10464347)
chr4 (83-208)||(10467995-10468120)
chr4 (129-206)||(53774839-53774916)
chr4 (392-468)||(10482452-10482528)
chr4 (74-208)||(10493621-10493755)
chr4 (128-200)||(6372443-6372515)
chr4 (145-208)||(829589-829652)
chr4 (390-465)||(10475482-10475557)
chr4 (79-186)||(10475156-10475260)
chr4 (387-470)||(829343-829425)
chr4 (392-454)||(10468313-10468375)
chr4 (395-472)||(8437025-8437102)
chr4 (395-472)||(8447379-8447456)
chr4 (129-202)||(11970980-11971053)
chr4 (386-438)||(838005-838057)
chr4 (390-465)||(10484704-10484779)
chr4 (129-182)||(35767017-35767070)
chr4 (130-202)||(3557726-3557798)
chr4 (130-202)||(3565744-3565816)
chr4 (129-201)||(11981682-11981754)
[»] chr2 (9 HSPs)
chr2 (79-201)||(25377023-25377145)
chr2 (116-198)||(18913559-18913641)
chr2 (119-202)||(20975547-20975630)
chr2 (128-198)||(18908811-18908881)
chr2 (128-198)||(18920767-18920837)
chr2 (112-200)||(14514882-14514970)
chr2 (99-177)||(20980573-20980651)
chr2 (130-190)||(20712543-20712603)
chr2 (394-434)||(21021047-21021087)
[»] chr1 (2 HSPs)
chr1 (20-200)||(50645485-50645665)
chr1 (130-200)||(4570927-4570997)
[»] chr5 (3 HSPs)
chr5 (330-471)||(37935285-37935426)
chr5 (132-187)||(23086784-23086839)
chr5 (136-206)||(18964824-18964894)
[»] chr7 (24 HSPs)
chr7 (99-206)||(22063611-22063718)
chr7 (99-206)||(22100462-22100569)
chr7 (115-203)||(19357895-19357983)
chr7 (131-202)||(660845-660916)
chr7 (99-206)||(22070080-22070187)
chr7 (99-206)||(22080837-22080944)
chr7 (118-184)||(22028616-22028682)
chr7 (129-206)||(14076677-14076754)
chr7 (129-206)||(14386705-14386782)
chr7 (99-184)||(15571911-15571996)
chr7 (39-180)||(19637237-19637378)
chr7 (27-184)||(26256672-26256829)
chr7 (112-200)||(1985955-1986043)
chr7 (26-118)||(19597737-19597828)
chr7 (390-437)||(19645452-19645499)
chr7 (87-184)||(16846480-16846577)
chr7 (112-200)||(20058057-20058145)
chr7 (99-178)||(9807793-9807872)
chr7 (132-182)||(24031257-24031307)
chr7 (87-184)||(16839397-16839494)
chr7 (132-177)||(23999478-23999523)
chr7 (112-200)||(18514787-18514875)
chr7 (130-198)||(29899374-29899442)
chr7 (130-182)||(36260253-36260305)
[»] scaffold0867 (1 HSPs)
scaffold0867 (99-206)||(4663-4770)
[»] chr6 (9 HSPs)
chr6 (130-202)||(20770650-20770722)
chr6 (128-198)||(6954521-6954591)
chr6 (87-200)||(6947880-6947993)
chr6 (88-177)||(19746717-19746806)
chr6 (88-177)||(33576128-33576217)
chr6 (128-200)||(6921350-6921422)
chr6 (145-206)||(17369679-17369740)
chr6 (128-200)||(6935218-6935290)
chr6 (128-184)||(14749395-14749451)
[»] scaffold0464 (1 HSPs)
scaffold0464 (116-203)||(8047-8134)
[»] chr8 (2 HSPs)
chr8 (99-206)||(27618460-27618567)
chr8 (110-166)||(42846459-42846515)
[»] scaffold0097 (1 HSPs)
scaffold0097 (130-190)||(16382-16442)


Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 20 - 569
Target Start/End: Complemental strand, 25915477 - 25914928
Alignment:
Q  20 atacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggttttgatggactccctttgttttggtcatgatttc 119  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915477 atacactcagttgttgctgcctcggggttttgacgaggtgccacgtgttcagccaacaattgtggttttgatggactccctttgttttggtcatgatttc 25915378  T
Q  120 aagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaatttttgttcaagcc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915377 aagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaatttttgttcaagcc 25915278  T
Q  220 aatctttattgaaatttgaaacgatggagttcttgccattgtacctttctaagaaaggtgatgcattgatattagcaaatgatcaaatcgacacagcatt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915277 aatctttattgaaatttgaaacgatggagttcttgccattgtacctttctaagaaaggtgatgcattgatattagcaaatgatcaaatcgacacagcatt 25915178  T
Q  320 tatctataaatgcagagaaaatagaggtgagccaattcaaattactaataaagtacggtggttgtgggctaaggattacgttgaaagtttggtttcaact 419  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915177 tatctataaatgcagagaaaatagaggcgagccaattcaaattactaataaagtacggtggttgtgggctaaggattacgttgaaagtttggtttcaact 25915078  T
Q  420 agttgaaagtgagtttctctttttcatattacttgatagaatttatgttacttctttacagccttgttggtttaatttataatactagaaatagattgtg 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915077 agttgaaagtgagtttctctttttcatattacttgatagaatttatgtcacttctttacagccttgttggtttaatttataatactagaaatagattgtg 25914978  T
Q  520 ggattgcttaaccgattcagttgtttgaaatcaaattttttcccaaatta 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25914977 ggattgcttaaccgattcagttgtttgaaatcaaattttttcccaaatta 25914928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 20 - 473
Target Start/End: Complemental strand, 25901459 - 25901006
Alignment:
Q  20 atacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggttttgatggactccctttgttttggtcatgatttc 119  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901459 atacactcagttgttgctacctcggggttttgacgaggtgccacgtgttcagccaacaattgtggttttgatggactccctttgttttggtcatgatttc 25901360  T
Q  120 aagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaatttttgttcaagcc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25901359 aagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaatatttgttcaagcc 25901260  T
Q  220 aatctttattgaaatttgaaacgatggagttcttgccattgtacctttctaagaaaggtgatgcattgatattagcaaatgatcaaatcgacacagcatt 319  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25901259 aatatttattgaaatttgaaacgatggagttattgccattgtacctttctaagaaaggtgatgcattgatattagcaaatgatcaaatcgacgcagcatt 25901160  T
Q  320 tatctataaatgcagagaaaatagaggtgagccaattcaaattactaataaagtacggtggttgtgggctaaggattacgttgaaagtttggtttcaact 419  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  25901159 tatctataaatgcagagaaaatagaggcgagccaattcaaattactaataaagtacagtggttgtgggccaaggattacgttgaaagtttggtttcaact 25901060  T
Q  420 agttgaaagtgagtttctctttttcatattacttgatagaatttatgttacttc 473  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  25901059 agttgaaagtgagtttctctttctcatattacttgttagaatttatgttacttc 25901006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 589 - 634
Target Start/End: Complemental strand, 25914907 - 25914862
Alignment:
Q  589 cttcaatttcattgctgttacgtagtattcaattgatattcttcga 634  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  25914907 cttcaatttcattgctgttacgtagtattcaattgattttcttcga 25914862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 12734874 - 12734787
Alignment:
Q  116 tttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcag 203  Q
    ||||||||||| |||||||||| ||||||  |||  ||| ||  |||||||||| ||||||||||||||  | |||||||||| ||||    
T  12734874 tttcaagggaacccattttgttttatggatgatgttggaattcggagttcaagattcttggattcaatttctcaaaattagttttcag 12734787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 453
Target Start/End: Complemental strand, 10571456 - 10571023
Alignment:
Q  20 atacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggttttgatggactccctttgttttggtcatgatttc 119  Q
    ||||||| | |||||||| ||||||||||||||||| ||| |  ||||||| |||||  |||||||||| ||  |||  ||||| ||| |||||||||||    
T  10571456 atacactgaattgttgcttcctcggggttttgacgaggtgtcttgtgttcaaccaacgcttgtggttttaatcaactgtctttgcttttgtcatgatttc 10571357  T
Q  120 aagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaatttttgttcaagcc 219  Q
    |||||||| ||| ||||| ||||||||||||  |||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||   |||||||     
T  10571356 aagggaagtcatcttgttttatggaaaatgacagattttggagttcaagagtcttggattcagttgtttaaaattagttatgagaatttccattcaagcg 10571257  T
Q  220 aatctttattgaaatttgaaacgatggagttcttgccattgtacctttctaagaaaggtgatgcattgatattagcaaatgatcaaatcgacacagcatt 319  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||  |||||||||| ||||||||| ||| ||||||| ||||    
T  10571256 aatatttattgaaatttgaaacgatggagttattgccattgtacctttctaagaatgcggaaacattgatatttgcaaatgatgaaaacgacacaacatt 10571157  T
Q  320 tatctataaatgcagagaaaatagaggtgagccaattcaaattactaataaagtacggtggttgtgggctaaggattacgttgaaagtttggtttcaact 419  Q
    ||||||||| |||||||| |||||||| |||| ||||  ||||||||||||| || ||||||| ||||| |||||||||||||||||||||||| |||||    
T  10571156 tatctataattgcagagacaatagaggcgagcaaattagaattactaataaaatatggtggttatgggccaaggattacgttgaaagtttggttccaact 10571057  T
Q  420 agttgaaagtgagtttctctttttcatattactt 453  Q
     | ||||||||||||||||||  |||||||||||    
T  10571056 cgatgaaagtgagtttctcttcctcatattactt 10571023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 20 - 453
Target Start/End: Complemental strand, 10553726 - 10553293
Alignment:
Q  20 atacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggttttgatggactccctttgttttggtcatgatttc 119  Q
    ||||||| | |||||||| || |||||||||||| | ||| | |||||||| |||||  |||||| ||||||  | |  ||||| ||| |||||||||||    
T  10553726 atacactgaattgttgcttccccggggttttgacaaggtgtctcgtgttcagccaacgcttgtgggtttgatcaattgtctttgcttttgtcatgatttc 10553627  T
Q  120 aagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaatttttgttcaagcc 219  Q
    |||||||||||| ||||| ||||||||||||  |||||| |||||||||||||||||||||| ||| | || ||||||||| |||||||   |||||||     
T  10553626 aagggaagccatcttgttttatggaaaatgacagattttggagttcaagagtcttggattcagttgcttaacattagttatgagaatttccattcaagcg 10553527  T
Q  220 aatctttattgaaatttgaaacgatggagttcttgccattgtacctttctaagaaaggtgatgcattgatattagcaaatgatcaaatcgacacagcatt 319  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||  |||||||||| ||||||||| ||| ||||||| ||||    
T  10553526 aatatttattgaaatttgaaacgatggagttattgccattgtacctttctaagaatgcggaaacattgatatttgcaaatgatgaaaacgacacaacatt 10553427  T
Q  320 tatctataaatgcagagaaaatagaggtgagccaattcaaattactaataaagtacggtggttgtgggctaaggattacgttgaaagtttggtttcaact 419  Q
    ||||||||| |||||||| |||||||| |||| ||||  ||||||||||||| || ||||||| ||||| |||||||||||||||||||||||| |||||    
T  10553426 tatctataattgcagagacaatagaggcgagcaaattagaattactaataaaatatggtggttatgggccaaggattacgttgaaagtttggttccaact 10553327  T
Q  420 agttgaaagtgagtttctctttttcatattactt 453  Q
     | ||||||||||||||||||  |||||||||||    
T  10553326 cgatgaaagtgagtttctcttcctcatattactt 10553293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 8443570 - 8443446
Alignment:
Q  84 gttttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaat 183  Q
    |||||||||||||  |||||||||  | ||||||||||| |||  |||| |||||| ||| | |||||||||||| ||||||| ||||||||||||||||    
T  8443570 gttttgatggactgtctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaat 8443471  T
Q  184 tgttaaaaattagttatcagaattt 208  Q
    | || ||||||||||||||||||||    
T  8443470 tatttaaaattagttatcagaattt 8443446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 10460515 - 10460699
Alignment:
Q  20 atacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggttttgatggactccctttgttttggtcatgatttc 119  Q
    |||||||||| ||||| ||||||||||||| || || |||||||||  ||| |||||| ||||||||||||||||||  ||||||||   | |||||||     
T  10460515 atacactcagctgttgttgcctcggggtttcgatgaggtgccacgttatcagccaacacttgtggttttgatggactgtctttgtttctcttatgatttt 10460614  T
Q  120 aagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcaga 204  Q
    |||||||  |||||||| |||||  | |||||| ||||| ||||||| ||||| |||| |||||| || |  |||||||||||||    
T  10460615 aagggaactcattttgtgatatgacagatgaagaattttggagttcacgagtcatggactcaattatttattattagttatcaga 10460699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 10482071 - 10482259
Alignment:
Q  20 atacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggttttgatggactccctttgttttggtcatgatttc 119  Q
    ||||||||| |||||||| |||||||||||| |  | ||| |||||  ||| ||||   ||| |||||||||||| |  |||||||||||||||||||      
T  10482071 atacactcaattgttgctacctcggggttttaataaggtgtcacgtcatcaaccaaagcttgcggttttgatggattgtctttgttttggtcatgattat 10482170  T
Q  120 aagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaattt 208  Q
     ||| ||   |||||||||||||| |||||||||||||| |||||||   ||||||||||||||| || ||||||| ||||||||||||    
T  10482171 gaggaaacttattttgttatatggcaaatgaaggattttggagttcagtcgtcttggattcaattatttaaaattacttatcagaattt 10482259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 6388129 - 6388310
Alignment:
Q  19 aatacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggttttgatggactccctttgttttggtcatgattt 118  Q
    |||||||||| || ||||| ||||||| ||||||  | || ||||||  ||| ||||   |||| |||||||||| ||  ||||||||| ||||||||||    
T  6388129 aatacactcaatttttgcttcctcgggattttgataaggttccacgttatcagccaaagcttgttgttttgatgggctgtctttgtttttgtcatgattt 6388228  T
Q  119 caagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 200  Q
      ||| ||  |||| |||||||||| |||||||||||||| | |  |||||||||||||||||| | |||||||||||||||    
T  6388229 tgaggaaactcattctgttatatggcaaatgaaggattttggcgcccaagagtcttggattcaactattaaaaattagttat 6388310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 8447832 - 8447646
Alignment:
Q  22 acactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggttttgatggactccctttgttttggtcatgatttcaa 121  Q
    |||||||| ||||| |||||| ||||||||| || |||||| |   |||||| ||| |||  |||||||||||||  |||||||||    ||||||||||    
T  8447832 acactcagctgttgttgcctcagggttttgatgaggtgccatgacatcatccgacacttgcagttttgatggactgtctttgtttttcatatgatttcaa 8447733  T
Q  122 gggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaattt 208  Q
    | |||  |||  | |||| ||| | |||||||||||  ||||||| ||||||||||||||||| || ||||||| ||||||||||||    
T  8447732 gagaactcatcattttatttggcagatgaaggatttcggagttcatgagtcttggattcaattatttaaaattaattatcagaattt 8447646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 837774 - 837854
Alignment:
Q  128 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaattt 208  Q
    |||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||| || |||||||| ||||| |||||    
T  837774 ccattttgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaattagctatcataattt 837854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 315 - 473
Target Start/End: Original strand, 10464472 - 10464630
Alignment:
Q  315 gcatttatctataaatgcagagaaaatagaggtgagccaattcaaattactaataaagtacggtggttgtgggctaaggattacgttgaaagtttggttt 414  Q
    ||||||||||||||| ||| ||| |||||||  |||| ||||  |||||||| ||  |||   ||||||   || |||||||||||||||||| | ||||    
T  10464472 gcatttatctataaaggcaaagacaatagagtagagcgaattggaattactagtactgtattatggttgcatgccaaggattacgttgaaagtctagttt 10464571  T
Q  415 caactagttgaaagtgagtttctctttttcatattacttgatagaatttatgttacttc 473  Q
    | ||  ||||||||||||||||||||   ||||||||||| |||||||||| |||||||    
T  10464572 cgacacgttgaaagtgagtttctcttccacatattacttgttagaatttatattacttc 10464630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 6392770 - 6392893
Alignment:
Q  79 ttgtggttttgatggactccctttgttttggtcatgatttcaagggaagccattttg---ttatatggaaaatgaaggattttcgagttcaagagtcttg 175  Q
    ||||||||||||||||||  ||||||||| ||| ||| |   ||| || ||||||||   | |||||| |||||||||||||| ||||||| ||||||||    
T  6392770 ttgtggttttgatggactttctttgtttttgtcttgactatgaggaaacccattttgtcatcatatggcaaatgaaggattttggagttcacgagtcttg 6392869  T
Q  176 gattcaattgttaaaaattagtta 199  Q
    ||||||||| || |||||||||||    
T  6392870 gattcaattatttaaaattagtta 6392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 10464218 - 10464347
Alignment:
Q  79 ttgtggttttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggat 178  Q
    |||||||||||||||| |  ||||||||| || |||||||| |    | |||||||||||||||| |||||||||||||| | | ||| |||||||||||    
T  10464218 ttgtggttttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggggatcaggagtcttggat 10464317  T
Q  179 tcaattgttaaaaattagttatcagaattt 208  Q
    ||||||||  ||| || ||||| |||||||    
T  10464318 tcaattgtataaagttggttataagaattt 10464347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 83 - 208
Target Start/End: Original strand, 10467995 - 10468120
Alignment:
Q  83 ggttttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaa 182  Q
    |||||||||||| |  |||||||| ||||||||||   ||| ||   |||||||||||||| |||||||||||||| |||||||   |||||||||||||    
T  10467995 ggttttgatggattgtctttgtttcggtcatgattatgaggaaacttattttgttatatggcaaatgaaggattttggagttcagtcgtcttggattcaa 10468094  T
Q  183 ttgttaaaaattagttatcagaattt 208  Q
    || || ||||||| |||| |||||||    
T  10468095 ttatttaaaattacttataagaattt 10468120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 53774839 - 53774916
Alignment:
Q  129 cattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaat 206  Q
    ||||||||||||||| |||||||||| ||| ||||| |||||||||||| ||||||  | ||||||||||||||||||    
T  53774839 cattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttatcagaat 53774916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 392 - 468
Target Start/End: Original strand, 10482452 - 10482528
Alignment:
Q  392 ggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctttttcatattacttgatagaatttatgtt 468  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||   ||||||||||| | |||||||||||    
T  10482452 ggattacgttgaaagtttggtttcgactcattgaaagtgagtttctcttccacatattacttgtttgaatttatgtt 10482528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 10493621 - 10493755
Alignment:
Q  74 aacaattgtggttttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtct 173  Q
    |||| ||||||| |||||||| |  |||| |||| ||||||||||| |    | ||||||||| || ||||||||||| |||||||||| ||| ||||||    
T  10493621 aacacttgtggtcttgatggattgtctttctttttgtcatgatttccaaaatacccattttgtaatctggaaaatgaaagattttcgagatcatgagtct 10493720  T
Q  174 tggattcaattgttaaaaattagttatcagaattt 208  Q
    ||||||||||| |  |||||| ||||| |||||||    
T  10493721 tggattcaattatataaaattggttataagaattt 10493755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 6372443 - 6372515
Alignment:
Q  128 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 200  Q
    ||||||| |||||||| |||||||||||| | ||||||||||||||| ||||||||| |  ||||||||||||    
T  6372443 ccattttattatatggcaaatgaaggattctggagttcaagagtcttagattcaattatataaaattagttat 6372515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 829652 - 829589
Alignment:
Q  145 aaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaattt 208  Q
    |||||||||||||| | ||||||||||||||| ||||||| || |||||||||||||| |||||    
T  829652 aaatgaaggattttggtgttcaagagtcttgggttcaattatttaaaattagttatcataattt 829589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 465
Target Start/End: Original strand, 10475482 - 10475557
Alignment:
Q  390 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctttttcatattacttgatagaatttat 465  Q
    |||||||||||||||||||| ||||| ||  ||||||||||||||||||||   ||||||||||| | ||||||||    
T  10475482 aaggattacgttgaaagtttagtttcgacacgttgaaagtgagtttctcttccacatattacttgtttgaatttat 10475557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 10475156 - 10475260
Alignment:
Q  79 ttgtggttttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggat 178  Q
    |||||||||||||||| |  ||||||||| || |||||||| |    | |||||||||||||||| |||||||||||||| |||   | |||||||||||    
T  10475156 ttgtggttttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggag---aggagtcttggat 10475252  T
Q  179 tcaattgt 186  Q
    ||||||||    
T  10475253 tcaattgt 10475260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 387 - 470
Target Start/End: Complemental strand, 829425 - 829343
Alignment:
Q  387 gctaaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctttttcatattacttgatagaatttatgttac 470  Q
    |||||||||||| |||||||||||||||| | |   |||||||||||||||||||  ||||| ||||| | |||||||||||||    
T  829425 gctaaggattac-ttgaaagtttggtttcgattctatgaaagtgagtttctctttcacatatgacttgtttgaatttatgttac 829343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 10468313 - 10468375
Alignment:
Q  392 ggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctttttcatattacttg 454  Q
    |||||||||||||||||||||||  |||  |||||||||||||||||||   |||||||||||    
T  10468313 ggattacgttgaaagtttggttttgactcattgaaagtgagtttctcttccacatattacttg 10468375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 472
Target Start/End: Complemental strand, 8437102 - 8437025
Alignment:
Q  395 ttacgttgaaagtttggtttcaactagttgaaagtgagtttctctttttcatattacttgatagaatttatgttactt 472  Q
    ||||||||||||||||||||| ||| |||||| |||||||||| ||   ||||||||||  | |||||| ||||||||    
T  8437102 ttacgttgaaagtttggtttcgactcgttgaatgtgagtttctattccacatattacttttttgaatttttgttactt 8437025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 472
Target Start/End: Complemental strand, 8447456 - 8447379
Alignment:
Q  395 ttacgttgaaagtttggtttcaactagttgaaagtgagtttctctttttcatattacttgatagaatttatgttactt 472  Q
    ||||||||||||||||||||| ||| |||||| |||||||||| ||   ||||||||||| |  ||||| ||||||||    
T  8447456 ttacgttgaaagtttggtttcgactcgttgaatgtgagtttctattccacatattacttgttttaatttttgttactt 8447379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 11971053 - 11970980
Alignment:
Q  129 cattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatca 202  Q
    ||||||||||||||| |||||||||| ||| ||||  |||||||||||| ||||||  | | ||||||||||||    
T  11971053 cattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttatca 11970980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 838005 - 838057
Alignment:
Q  386 ggctaaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctc 438  Q
    ||||||||||||| |||||||||||||||||| |  |||||| ||||||||||    
T  838005 ggctaaggattactttgaaagtttggtttcaattcattgaaaatgagtttctc 838057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 465
Target Start/End: Original strand, 10484704 - 10484779
Alignment:
Q  390 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctttttcatattacttgatagaatttat 465  Q
    |||||||||||||||||| | ||||| ||  ||||||||||||| ||||||   ||||||||||| | ||||||||    
T  10484704 aaggattacgttgaaagtctagtttcgacacgttgaaagtgagtgtctcttccacatattacttgtttgaatttat 10484779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 35767017 - 35767070
Alignment:
Q  129 cattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaa 182  Q
    ||||||||||||||||| ||| | || ||| ||||| |||||||||||||||||    
T  35767017 cattttgttatatggaagatggaagaatttggagttgaagagtcttggattcaa 35767070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 3557726 - 3557798
Alignment:
Q  130 attttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatca 202  Q
    ||||| |||||||| | |||||||| ||| | ||| |||||||||||| ||||||  | ||||||||||||||    
T  3557726 attttattatatggcatatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatca 3557798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 3565744 - 3565816
Alignment:
Q  130 attttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatca 202  Q
    ||||| |||||||| | |||||||| ||| | ||| |||||||||||| ||||||  | ||||||||||||||    
T  3565744 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatca 3565816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11981754 - 11981682
Alignment:
Q  129 cattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatc 201  Q
    ||||||||||||||| |||||||||| ||| ||||  ||||||| |||| || |||  | |||||||||||||    
T  11981754 cattttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttatc 11981682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 25377023 - 25377145
Alignment:
Q  79 ttgtggttttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggat 178  Q
    |||||||||||| |||||  ||||||||| ||||||||||  ||| || |||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  25377023 ttgtggttttgacggactgtctttgtttttgtcatgatttggaggaaaaccattttgttatatggatgatgaaggattttggagttcaagagtcttggat 25377122  T
Q  179 tcaattgttaaaaattagttatc 201  Q
    |||||| || |||||||||||||    
T  25377123 tcaattatttaaaattagttatc 25377145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 18913641 - 18913559
Alignment:
Q  116 tttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 198  Q
    ||||| ||||| |||||||||||||||||| |||| ||| ||| |||||||||||||||||| ||||||  | ||||||||||    
T  18913641 tttcaggggaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18913559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 20975547 - 20975630
Alignment:
Q  119 caagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatca 202  Q
    ||||||||  ||||||||||||||| |||||| ||| ||| ||||| |||| ||||||||||||||||| ||| |||| |||||    
T  20975547 caagggaaatcattttgttatatggcaaatgagggaatttggagttgaagattcttggattcaattgtttaaatttaggtatca 20975630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 18908881 - 18908811
Alignment:
Q  128 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 198  Q
    |||||||||||||||||| |||| ||| ||| |||||||||||||||||| ||||||  | ||||||||||    
T  18908881 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18908811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 18920837 - 18920767
Alignment:
Q  128 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 198  Q
    |||||||||||||||||| |||| ||| ||| |||||||||||||||||| ||||||  | ||||||||||    
T  18920837 ccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18920767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 14514882 - 14514970
Alignment:
Q  112 atgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 200  Q
    |||||||||||  || |||| ||||||||||||||||| | || ||| ||||| |||| ||||||| ||||||  | ||||||||||||    
T  14514882 atgatttcaagaaaacccatcttgttatatggaaaatggatgaatttggagttgaagattcttggactcaattccttaaaattagttat 14514970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 20980573 - 20980651
Alignment:
Q  99 ctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttgga 177  Q
    ||||||||| ||||| ||| ||| ||||   |||||||||||||||||||||  || ||| ||||| ||||||||||||    
T  20980573 ctttgtttttgtcattattccaacggaaatgattttgttatatggaaaatgacagaatttagagttgaagagtcttgga 20980651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 20712603 - 20712543
Alignment:
Q  130 attttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaa 190  Q
    |||||||||||||||| |||| ||| |||  |||| |||||||||||||| ||||| ||||    
T  20712603 attttgttatatggaagatgagggaatttgcagttgaagagtcttggattaaattgctaaa 20712543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 21021087 - 21021047
Alignment:
Q  394 attacgttgaaagtttggtttcaactagttgaaagtgagtt 434  Q
    |||| ||||||||||||||||||||| ||||||||| ||||    
T  21021087 attatgttgaaagtttggtttcaacttgttgaaagtaagtt 21021047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 50645665 - 50645485
Alignment:
Q  20 atacactcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggttttgatggactccctttgttttggtcatgatttc 119  Q
    |||||||||  |||||||||||||||||||| || |  | ||||||  ||| |||||| ||  |||||| | ||||   |||||| ||  |||||||||     
T  50645665 atacactcaactgttgctgcctcggggttttcacaagcttccacgttatcagccaacacttaaggttttaagggacaatctttgtatttttcatgatttt 50645566  T
Q  120 aagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 200  Q
     ||||||  ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| || ||||||||||||    
T  50645565 gagggaactcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttat 50645485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 4570927 - 4570997
Alignment:
Q  130 attttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 200  Q
    |||||||||||||| |||||||| | ||| | ||| |||| ||||||| ||||||| | ||||||||||||    
T  4570927 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 4570997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 330 - 471
Target Start/End: Original strand, 37935285 - 37935426
Alignment:
Q  330 tgcagagaaaatagaggtgagccaattcaaattactaataaagtacggtggttgtgggctaaggattacgttgaaagtttggtttcaactagttgaaagt 429  Q
    |||||||| |||| | |||||  ||||  ||||||||||| |  | |||||||| |||| |||||||||||||||||||||||| | |||   |||||||    
T  37935285 tgcagagagaataaatgtgagaaaattagaattactaatagaacatggtggttgcgggcaaaggattacgttgaaagtttggttccgactcaatgaaagt 37935384  T
Q  430 gagtttctctttttcatattacttgatagaatttatgttact 471  Q
    |||| ||||||  |||||||||||| ||||||| ||||||||    
T  37935385 gagtctctcttcctcatattacttgctagaattcatgttact 37935426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 23086784 - 23086839
Alignment:
Q  132 tttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgtt 187  Q
    |||||||||||| | |||||||| ||| |||||||||||||||||| ||| |||||    
T  23086784 tttgttatatggcagatgaaggagtttggagttcaagagtcttggactcagttgtt 23086839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 18964894 - 18964824
Alignment:
Q  136 ttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaat 206  Q
    |||||||| |||||||||| ||| ||||| |||| ||||||| ||||||  | |||||| |||||||||||    
T  18964894 ttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaat 18964824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 22063611 - 22063718
Alignment:
Q  99 ctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 198  Q
    |||||||||  ||||||||||||   ||  ||||||||||||||| |||||||||| ||| || ||||||||||||||| ||| || || ||||||||||    
T  22063611 ctttgtttttttcatgatttcaaacaaactcattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagtt 22063710  T
Q  199 atcagaat 206  Q
    ||||||||    
T  22063711 atcagaat 22063718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 22100462 - 22100569
Alignment:
Q  99 ctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 198  Q
    |||||||||  ||||||||||||   ||  |||||| |||||||| |||||||| | ||| |||||||||||||||||| ||| || || ||||||||||    
T  22100462 ctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagtt 22100561  T
Q  199 atcagaat 206  Q
    ||||||||    
T  22100562 atcagaat 22100569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 19357895 - 19357983
Alignment:
Q  115 atttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcag 203  Q
    ||||||| || | |||||| ||| ||||||| |||| ||| ||| |||||||||||||||||| |||||| ||||||||||||| ||||    
T  19357895 atttcaaagggacccatttcgttttatggaagatgatggaatttggagttcaagagtcttggactcaattcttaaaaattagttttcag 19357983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 660916 - 660845
Alignment:
Q  131 ttttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatca 202  Q
    ||||||||||||| | |||||||| ||||||||| |||||||||||| ||||||  | ||||||||||||||    
T  660916 ttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatca 660845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 22070080 - 22070187
Alignment:
Q  99 ctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 198  Q
    |||||||||  ||||||||||||  |||  |||||| |||||||| |||||||| | ||| |||||||||||||||||| ||  || || ||||||||||    
T  22070080 ctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaattagtt 22070179  T
Q  199 atcagaat 206  Q
    || |||||    
T  22070180 ataagaat 22070187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 22080837 - 22080944
Alignment:
Q  99 ctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 198  Q
    |||||||||  ||||||||||||   ||  |||||| |||||||| |||||||| | ||| |||||||||||||||||| ||  || || ||||||||||    
T  22080837 ctttgtttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaattagtt 22080936  T
Q  199 atcagaat 206  Q
    ||||||||    
T  22080937 atcagaat 22080944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 22028616 - 22028682
Alignment:
Q  118 tcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaatt 184  Q
    |||||| || ||||||||||||||||||||||| ||||| | ||||| |||||||||||| ||||||    
T  22028616 tcaaggaaacccattttgttatatggaaaatgacggattatggagttgaagagtcttggactcaatt 22028682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 14076677 - 14076754
Alignment:
Q  129 cattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaat 206  Q
    ||||| ||||||||| |||||||||| ||| ||||| |||| ||||||| ||||||  | ||||||||||||||||||    
T  14076677 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaat 14076754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 14386705 - 14386782
Alignment:
Q  129 cattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaat 206  Q
    ||||| ||||||||| |||||||||| ||| ||||| |||| ||||||| ||||||  | ||||||||||||||||||    
T  14386705 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaat 14386782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 15571996 - 15571911
Alignment:
Q  99 ctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaatt 184  Q
    |||||||||  | ||||||||||||||| ||||||||| || ||| |||||| ||| ||| ||||| ||||||||||| |||||||    
T  15571996 ctttgtttttcttatgatttcaagggaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgggttcaatt 15571911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 180
Target Start/End: Complemental strand, 19637378 - 19637237
Alignment:
Q  39 cctcggggttttgacgaagtgccacgtgttcatccaacaattgtggttttgatggactccctttgttttggtcatgatttcaagggaagccattttgtta 138  Q
    ||||| ||||||||  ||||  || ||||||| |||||  |||| || ||| ||||||||||||| ||   ||||||||| || ||||   ||||| |||    
T  19637378 cctcgaggttttgataaagtttcatgtgttcaaccaactcttgttgtgttgctggactccctttgcttgtctcatgattttaatggaactgattttatta 19637279  T
Q  139 tatggaaaatgaaggattttcgagttcaagagtcttggattc 180  Q
    ||||| |||||||||| ||| ||||||||||||| |||||||    
T  19637278 tatggcaaatgaaggaatttggagttcaagagtcgtggattc 19637237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 26256672 - 26256829
Alignment:
Q  27 cagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggttttgatggactccctttgttttggtcatgatttcaagggaa 126  Q
    ||||||||||||||||  |||||||| || ||||||  |||||| |||    ||  |||||||||||| | ||||||||||  |||||||  ||||| ||    
T  26256672 cagttgttgctgcctcaaggttttgatgaggtgccatttgttcagccagttcttaaggttttgatggaatgcctttgtttttctcatgataccaaggaaa 26256771  T
Q  127 gccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaatt 184  Q
       |||||||| ||||| | |||||||| | | |||||||||||||||||| ||||||    
T  26256772 atgattttgttttatggcagatgaaggagtatggagttcaagagtcttggactcaatt 26256829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 1986043 - 1985955
Alignment:
Q  112 atgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 200  Q
    |||||||||||  || |||||||||| | ||| |||||||||| ||| | ||| |||| ||||||| ||||||||| ||||||||||||    
T  1986043 atgatttcaagaaaacccattttgttctttggcaaatgaaggaatttggcgttgaagaatcttggactcaattgtttaaaattagttat 1985955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 19597828 - 19597737
Alignment:
Q  26 tcagttgttgctgcctcggggttttgacgaagtgccacgtgttcatccaacaattgtggttttgatggactccctttgttttggtcatgattt 118  Q
    |||||||||||  ||||||||||||||  | ||||||| |||||  |||||  |||| ||||||||||| |||||||||||| ||||||||||    
T  19597828 tcagttgttgccccctcggggttttgataatgtgccacctgttcg-ccaactcttgttgttttgatggattccctttgtttttgtcatgattt 19597737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 19645499 - 19645452
Alignment:
Q  390 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttct 437  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  19645499 aaggattatgttgaaagtttggtttcaacttgttgaaagtaagtttct 19645452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 16846577 - 16846480
Alignment:
Q  87 ttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaatt 184  Q
    |||||||||| ||||||||||  ||||| | |||||  ||  ||| ||||||||||||| ||||  |||| | |||||||||||||||||| ||||||    
T  16846577 ttgatggactgcctttgtttttctcatgttgtcaagcaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactcaatt 16846480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 20058145 - 20058057
Alignment:
Q  112 atgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 200  Q
    ||||||| |||  ||| ||||||||||||||||||||| |||| ||  ||||| |||||||||||  ||||||  | ||||||||||||    
T  20058145 atgattttaagcaaagtcattttgttatatggaaaatggaggaattcagagttgaagagtcttggtgtcaatttcttaaaattagttat 20058057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 9807793 - 9807872
Alignment:
Q  99 ctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggat 178  Q
    ||||||||| |||||||||| |||  || | |||| ||||||||| | |||||||| ||| ||||| |||||||||||||    
T  9807793 ctttgtttttgtcatgatttgaagaaaaccgatttcgttatatggcagatgaaggaatttggagttgaagagtcttggat 9807872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 24031257 - 24031307
Alignment:
Q  132 tttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaa 182  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||| ||||    
T  24031257 tttgtcatatggaaaatgaatgagtttggagttcaagagtcttggactcaa 24031307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 16839494 - 16839397
Alignment:
Q  87 ttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaatt 184  Q
    |||||||||| ||||||||||  ||||| | | |||  ||  ||| ||||||||||||| ||||  |||| | |||||||||||||||||| ||||||    
T  16839494 ttgatggactgcctttgtttttctcatgttgttaagaaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactcaatt 16839397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 23999523 - 23999478
Alignment:
Q  132 tttgttatatggaaaatgaaggattttcgagttcaagagtcttgga 177  Q
    ||||||||||||||||||||||| ||| |||||||| |||| ||||    
T  23999523 tttgttatatggaaaatgaaggagtttggagttcaaaagtcgtgga 23999478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 18514875 - 18514787
Alignment:
Q  112 atgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 200  Q
    |||||||||||  |||||||||  |||||||||||||| | || ||| ||||| || | ||||||| ||||||  | ||||||||||||    
T  18514875 atgatttcaagaaaagccatttcattatatggaaaatggacgaatttggagttgaaaactcttggactcaattccttaaaattagttat 18514787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 29899374 - 29899442
Alignment:
Q  130 attttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 198  Q
    |||||||||||||| | |||||| | ||| | ||| ||||||| |||| |||||| |||||||||||||    
T  29899374 attttgttatatggcagatgaagaaatttggggttgaagagtcctggactcaatttttaaaaattagtt 29899442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 36260253 - 36260305
Alignment:
Q  130 attttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaa 182  Q
    |||||||||||||||| ||| | || ||| ||||| |||||||||||||||||    
T  36260253 attttgttatatggaagatggaagaatttggagttgaagagtcttggattcaa 36260305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 4770 - 4663
Alignment:
Q  99 ctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 198  Q
    |||||||||  ||||||||||||   ||  |||||| |||||||| |||||||| | ||| |||||||||||||||||| ||| || || ||||||||||    
T  4770 ctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagtt 4671  T
Q  199 atcagaat 206  Q
    ||||||||    
T  4670 atcagaat 4663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 20770650 - 20770722
Alignment:
Q  130 attttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatca 202  Q
    |||||||||||||| |||||||||| ||| || || ||||||| |||||||||||  | ||||||||||||||    
T  20770650 attttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttatca 20770722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 6954591 - 6954521
Alignment:
Q  128 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 198  Q
    |||||||||||| ||| |||||||||| ||| ||||| |||| ||||||| ||||||| | ||||||||||    
T  6954591 ccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 6954521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 6947993 - 6947880
Alignment:
Q  87 ttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgt 186  Q
    |||||||| | ||||||||||   ||||||||||||  || ||| |||||| | ||| |||||||||| ||| ||||| |||| ||||||| ||||||      
T  6947993 ttgatggattgcctttgtttttcacatgatttcaagaaaacccactttgttctttggcaaatgaaggaatttggagttgaagaatcttggactcaattcc 6947894  T
Q  187 taaaaattagttat 200  Q
    | ||||||||||||    
T  6947893 ttaaaattagttat 6947880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 19746806 - 19746717
Alignment:
Q  88 tgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttgga 177  Q
    ||||||||| |||||| |||   || |||||||||||||   | |||||||||||| |||||||| | ||| ||||||||||||||||||    
T  19746806 tgatggactgcctttgcttttcgcacgatttcaagggaactgaatttgttatatggcaaatgaagaagtttggagttcaagagtcttgga 19746717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 33576128 - 33576217
Alignment:
Q  88 tgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttgga 177  Q
    ||||||||| ||||||||||   || ||||| |||||||   | |||||||||||||  |||||||| ||| ||||||||||||||||||    
T  33576128 tgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttgga 33576217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 6921422 - 6921350
Alignment:
Q  128 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 200  Q
    |||||||||||| ||| |||||||||| ||| ||||| |||| ||||||| ||||||  | ||||||||||||    
T  6921422 ccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 6921350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 17369679 - 17369740
Alignment:
Q  145 aaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaat 206  Q
    |||||||||| ||| ||||| |||| ||||||| ||||||  | ||||||||||||||||||    
T  17369679 aaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaat 17369740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 6935290 - 6935218
Alignment:
Q  128 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 200  Q
    ||||| |||||| ||| |||||||||| ||| |||||||||| ||||||| | ||||  | ||||||||||||    
T  6935290 ccattatgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 6935218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 14749395 - 14749451
Alignment:
Q  128 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaatt 184  Q
    |||||||||| ||||||  |||| ||| ||| |||||||||||||||||| ||||||    
T  14749395 ccattttgttttatggaggatgatggaatttggagttcaagagtcttggactcaatt 14749451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 8047 - 8134
Alignment:
Q  116 tttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcag 203  Q
    ||||||||||| |||||||||| ||||||  |||| ||| ||  |||||||||| ||||||||||||||  | |||||||||| ||||    
T  8047 tttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcag 8134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 27618460 - 27618567
Alignment:
Q  99 ctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 198  Q
    ||||||||| |||||||||| |||  ||  ||||||||||||||||||||| | ||  |  ||||| |||||||||||| ||| ||| | ||| ||||||    
T  27618460 ctttgtttttgtcatgattttaagcaaactcattttgttatatggaaaatggaagaactcggagttgaagagtcttggactcagttgcttaaagttagtt 27618559  T
Q  199 atcagaat 206  Q
    ||||||||    
T  27618560 atcagaat 27618567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 42846515 - 42846459
Alignment:
Q  110 tcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttca 166  Q
    |||||||||  ||| || |||||||||||| ||| |||||||||||||| |||||||    
T  42846515 tcatgattttgaggaaacccattttgttatttggcaaatgaaggattttggagttca 42846459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 16442 - 16382
Alignment:
Q  130 attttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaa 190  Q
    |||||||||||||||| |||| ||| |||  |||| |||||||||||||| ||||| ||||    
T  16442 attttgttatatggaagatgagggaatttgcagttgaagagtcttggattaaattgctaaa 16382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University