View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_high_12 (Length: 337)
Name: NF19306_high_12
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 20925611 - 20925499
Alignment:
| Q |
18 |
gaatcgaagtttcagtttccggctacacaaaaatcaatggtgatggctgctgctccagctttggtgggttgtcattattaggcaatggtgggattaattg |
117 |
Q |
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| T |
20925611 |
gaatcgaagtttcagtttccggctacacaaaaatcaatggtgatggctgctgctccagctttggtgggttgtcattattaggcaatggtgggattaattg |
20925512 |
T |
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| Q |
118 |
aaagaagagtttc |
130 |
Q |
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| T |
20925511 |
aaagaagagtttc |
20925499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 20925424 - 20925302
Alignment:
| Q |
205 |
cataactatccaatattccttgaattattctttggtttaataataatttccattttgatatatttgatctgcaaaattgttcaagttggtatactttgag |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20925424 |
cataactatccaatattccttgaattattctttggtttaataataatttttattttgatatatttgatctgcaaaattgttcaagttggtatactttgag |
20925325 |
T |
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| Q |
305 |
taagtaagtggttagtgtctgtg |
327 |
Q |
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| T |
20925324 |
taagtaagtggttagtgtttgtg |
20925302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 35506629 - 35506657
Alignment:
| Q |
290 |
ttggtatactttgagtaagtaagtggtta |
318 |
Q |
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| T |
35506629 |
ttggtatactttgagtaagtaagtggtta |
35506657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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