View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_high_16 (Length: 295)
Name: NF19306_high_16
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_high_16 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 2632352 - 2632631
Alignment:
| Q |
1 |
tcagggacaacttgatactctgtatgtaactccagtgacaactaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacacccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2632352 |
tcagggacaacttgatactctgtatgtaactccagtgacaactaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacacccta |
2632451 |
T |
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| Q |
101 |
taaaaataagggagcaaagcaaactggatatttactaccctgtctataaccagcctgattattcattacaattacaggagtcttccatcttatttttatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2632452 |
taaaaataagggagcaaagcaaactggatatttactaccctgtctataaccagcctgattattcattacaattacaggagtcttccatcttatttttatc |
2632551 |
T |
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| Q |
201 |
aacttaaactgacaacaaattttagaaaatgaaaacaaaatatgtttttaaaaattaaacagacacttacacttcctttg |
280 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2632552 |
aacttaatctgacaacaaattttagaaaatgaaaacaaaatatgtttttaaaaattaaacagacacttacacttcctttg |
2632631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 7660 - 7380
Alignment:
| Q |
1 |
tcagggacaacttgatactctgtatgtaa-ctccagtgacaactaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccct |
99 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7660 |
tcagggacaacttgatactctgtatgtaaactccagtgacaactaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacaccct |
7561 |
T |
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| Q |
100 |
ataaaaataagggagcaaagcaaactggatatttactaccctgtctataaccagcctgattattcattacaattacaggagtcttccatcttatttttat |
199 |
Q |
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| T |
7560 |
ataaaaataagggagcaaagcaaactggatatttactaccctttctataaccagcctgattattcattacaattacaggagtcttccatcttatttttat |
7461 |
T |
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| Q |
200 |
caacttaaactgacaacaaattttagaaaatgaaaacaaaatatgtttttaaaaattaaacagacacttacacttcctttg |
280 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7460 |
caacttaatctgacaacaaattttagaaaatgaaaacaaaatatgtttttaaaaattaaacagacacttacacttcctttg |
7380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 45238137 - 45237859
Alignment:
| Q |
1 |
tcagggacaacttgatactctgt----atgtaactccagtgacaactaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacac |
96 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45238137 |
tcagggacaacttgatactcagtcagtatgtaactccagtgacaactaagtgagggactgacgtgacatttcataaaagcaggggaccaaattgatacac |
45238038 |
T |
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| Q |
97 |
cctataaaaataagggagcaaagcaaactggatatttactaccctgtctataaccagcctgattattcattacaattacaggagtcttccatcttatttt |
196 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45238037 |
cctataaaaataagggagcaaa-----ctggatatttactaccctatctataaccagcttgattattcattacaattacaggagtcttccatcttatttt |
45237943 |
T |
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| Q |
197 |
tatcaacttaaactgacaacaaattttagaaaatgaaaacaaaatatgtttttaaaaattaaacagacacttacacttcctttg |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45237942 |
tatcaacttaaactgacaacaaattttagaaaatgaaaacaaaatatgtttttaaaaagtaaacagacacttacacttcctttg |
45237859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 7830965 - 7830856
Alignment:
| Q |
171 |
attacaggagtcttccatcttatttttatcaacttaaactgacaacaaattttagaaaatgaaaacaaaatatgtttttaaaaattaaacagacacttac |
270 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7830965 |
attactggagtcttccatcttatttttatcaacttaaactgacaacaaattttagaaaatgaaaacaaaatatgtttttaaaaagtaaacagacacttac |
7830866 |
T |
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| Q |
271 |
acttcctttg |
280 |
Q |
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|||||||||| |
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| T |
7830865 |
acttcctttg |
7830856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 7831147 - 7831000
Alignment:
| Q |
1 |
tcagggacaacttgatactctgtatgtaactccagtgacaactaagtgagggactgacgtgacattttataaaagcaggggaccaaattgatacacccta |
100 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7831147 |
tcagggacaacttgatacgc---atgtaactccagtgacaactaagtgagggactgacgtgacattttataaaagtaggggaccaaattgatacacccta |
7831051 |
T |
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| Q |
101 |
taaaaataagggagcaaagcaaactggatatttactaccctgtctataaccagcct |
156 |
Q |
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||||||| ||| |||||| |||||||||| |||||| |||||||| ||||| |
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| T |
7831050 |
taaaaatgagg-----cagcaaattggatatttagtaccctatctataactagcct |
7831000 |
T |
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