View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_high_17 (Length: 294)
Name: NF19306_high_17
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 14775298 - 14775453
Alignment:
| Q |
1 |
tgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacgggggattttttctaagaagagggcatgaagatatataaatcctgccaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
14775298 |
tgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacggggcattttttctaagaagagggcgtgaagagatataaatcctgccaa |
14775397 |
T |
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| Q |
101 |
agaaagtcctcgctcattcacaccttcaggcaa-ttttttcgcacaaccttcttta |
155 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14775398 |
agaaagtccccgctcattcacaccttcaggcaatttttttcgcacaaccttcttta |
14775453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 152 - 282
Target Start/End: Original strand, 14781516 - 14781646
Alignment:
| Q |
152 |
tttattttaatgatccacaagttcaaggatcatattagttggtttgagtttacccaacccgagnnnnnnnataaatttacaagggtaagacattgatact |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14781516 |
tttattttaatgatccacaagttcaaggatcatattagttggtttgagtttacccaacccgagtttttttataaatttacaagggtaagacattgatact |
14781615 |
T |
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| Q |
252 |
agacataaatcccaaaaaccattttcaatat |
282 |
Q |
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| T |
14781616 |
agacataaatcacaaaaaccattttcaatat |
14781646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 17882671 - 17882826
Alignment:
| Q |
1 |
tgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacgggggattttttctaagaagagggcatgaagatatataaatcctgccaa |
100 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||| ||||| | || |||||||| ||| ||| |||||||| ||| ||| |||| ||| |
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| T |
17882671 |
tgatatcatcattatatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaa |
17882770 |
T |
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| Q |
101 |
agaaagtcctcgctcattcacaccttcaggcaatt-ttttcgcacaaccttcttta |
155 |
Q |
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|| || |||||| |||||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
17882771 |
agtaattcctcgttcattcacaccttcagacaattctttttgcacaaccttcttta |
17882826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 15050134 - 15050289
Alignment:
| Q |
1 |
tgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacgggggattttttctaagaagagggcatgaagatatataaatcctgccaa |
100 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||||||| |||| | || ||||| | ||| |||| ||||||||||| ||||| || ||| |
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| T |
15050134 |
tgatatcataattatatccaaacttcctgagtacggtccatgttgcctcaggaggccccttttccatgaaaagggtatgaagatatagaaatcatgtcaa |
15050233 |
T |
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| Q |
101 |
agaaagtcctcgctcattcacaccttcaggc-aattttttcgcacaaccttcttta |
155 |
Q |
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| T |
15050234 |
ggtaagttctcgttcattcacaccttcagacaaatttgtttgcacaaccttcttta |
15050289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 15017369 - 15017491
Alignment:
| Q |
5 |
atcatcattatatccaaacttcctgagcacggtccatgttttctcacgggggattttttctaagaagagggcatgaagatatataaatcctgccaaagaa |
104 |
Q |
| |
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||||| ||||||||||||||| | ||||| ||||||||| |||| | || |||||||| ||| |||||||||||| ||| |||||||| ||| | |
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| T |
15017369 |
atcataattatatccaaacttttttagcacagtccatgttgcctcaagaggccctttttctatgaaaagggcatgaagaaatagaaatcctgttgaagta |
15017468 |
T |
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| Q |
105 |
agtcctcgctcattcacaccttc |
127 |
Q |
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|||||||| |||||||| ||||| |
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| T |
15017469 |
agtcctcgttcattcacgccttc |
15017491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 36874443 - 36874288
Alignment:
| Q |
1 |
tgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacgggggattttttctaagaagagggcatgaagatatataaatcctgccaa |
100 |
Q |
| |
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|||| |||||||||||||| ||||| |||||||| |||||||| ||||| | | |||||||| ||| |||||||||||| ||| |||||| | ||| |
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| T |
36874443 |
tgatttcatcattatatccgaactttctgagcacagtccatgtagtctcaagacgccctttttctatgaaaagggcatgaagaaatagaaatcccgtcaa |
36874344 |
T |
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| Q |
101 |
agaaagtcctcgctcattcacaccttcaggcaattt-tttcgcacaaccttcttta |
155 |
Q |
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|| ||||||||| || || |||||||||| |||||| | | ||||||||||||||| |
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| T |
36874343 |
agtaagtcctcgttcgttaacaccttcagacaatttatcttgcacaaccttcttta |
36874288 |
T |
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