View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_high_19 (Length: 275)
Name: NF19306_high_19
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 31801640 - 31801379
Alignment:
| Q |
1 |
ctattcacgtgcatggtaagccatatgattggtttgacttcattttttaaatatggccatgcacctaccgtatctttgatatactgtattactgttacgt |
100 |
Q |
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| T |
31801640 |
ctattcacgtgcatggtaagccatatgattggtttgacttcattttttaaatatggccatgcacctaccgtatctttgatatactgtattactgttacgt |
31801541 |
T |
|
| Q |
101 |
acatgcattggattaatagctaaataatcgttatatatatctactagataataacgtttcaaccaacatgatttgtctatgtggtaaaagattttaagca |
200 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31801540 |
acatgcattggattaatagttaaataattgttatatatatctactagataataacgtttcaaccaacatgatttgtccatgtggtaaaagattttaagca |
31801441 |
T |
|
| Q |
201 |
tcttaaaccagtactgtacttgaatgctatctctaactcttgaatatgaaaagcacttggtg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31801440 |
tcttaaaccagtactgtacttgaatgctatctctaactcttgaatatgaaaagcacttggtg |
31801379 |
T |
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