View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_high_4 (Length: 569)
Name: NF19306_high_4
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 145 - 543
Target Start/End: Complemental strand, 775479 - 775089
Alignment:
| Q |
145 |
atgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgtcttgtgccgaaaacggcttttaagagatcctgaag |
244 |
Q |
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| T |
775479 |
atgtttctggtacccttagcagcttacattatgtggcagcttctatacctcctcattgttaatgtcttgtgccgaaaacggcttttaagagatcctgaag |
775380 |
T |
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| Q |
245 |
tcatgagttcctataggtaatcgactatcgcatacatatttccttcccnnnnnnngagttcataatagtaggaagaaggacgacaatagatagagtcaag |
344 |
Q |
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| T |
775379 |
tcatgacttcctataggtaatcaactatcgcatacatatttccttccctttttttgagttcataatagtaggaagagggacgacaatagatagagtcgag |
775280 |
T |
|
| Q |
345 |
ataggtactgtaaaaatgacttgtattattgtatataatcaaactgacttttgtaactttaatgtttgtatctttgaccactaaatacttttatacatgc |
444 |
Q |
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| T |
775279 |
ataggtactgtaaaaatgacttgtattattgtatataatcaaactgacttttgtaactttaatgtttgtatctttgaccactagatacttttatacatgc |
775180 |
T |
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| Q |
445 |
atccaaactttattagtctcattttagttaacttaaatatgatctgtctaatgtcttgatacatttcattgacaaactagtagaatattaatatcatta |
543 |
Q |
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| T |
775179 |
atccaaac-ttattagtctcattttagttaacttaaatatggtc-------tgtcttgatacatttcattgacaaactagtagaatattaatatcatta |
775089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 52142477 - 52142729
Alignment:
| Q |
13 |
ttcttttcaggaattgccttctttaccattagatggtggaatcctgctacctttgaagctatgcatccagagggatctcttgatggagatacatggcctt |
112 |
Q |
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| T |
52142477 |
ttctttccaggaattgttatctttaccattagatggtggaatcctgctacttttgaagctatgcatccagagggatctcttcaaagagttacatggcctt |
52142576 |
T |
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| Q |
113 |
ttgttgaagataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgtctt |
212 |
Q |
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| T |
52142577 |
atgttgaagataaatcctatctttggacatggctgtttctggttcccttagtagcttacattctgtggcaggttctatacttcctcattgtcaatgtctt |
52142676 |
T |
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| Q |
213 |
gtgccgaaaacggcttttaagagatcctgaagtcatgagttcctataggtaat |
265 |
Q |
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| T |
52142677 |
acgccgacaaaggcttttaagagatcctgaagtcatgacatcctacaggtaat |
52142729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 17456051 - 17455921
Alignment:
| Q |
120 |
agataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgtcttgtgccga |
219 |
Q |
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| T |
17456051 |
agataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgccga |
17455952 |
T |
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| Q |
220 |
aaacggcttttaagagatcctgaagtcatga |
250 |
Q |
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| T |
17455951 |
caacggcttttaagagatcctgaaatcatga |
17455921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 31 - 265
Target Start/End: Complemental strand, 17805490 - 17805256
Alignment:
| Q |
31 |
ttctttaccattagatggtggaatcctgctacctttgaagctatgcatccagagggatctcttgatggagatacatggccttttgttgaagataaatcct |
130 |
Q |
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| T |
17805490 |
ttctttaccattcgatggtggaatcctgagaccttagaagctatgcgaccagagggagctgctgcaagagttacatggccttatattgaagataaatcct |
17805391 |
T |
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| Q |
131 |
atatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgtcttgtgccgaaaacggctttt |
230 |
Q |
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| T |
17805390 |
atctatgtacatggctgtttctggttcccttagtagtttacaccttgtggcaggttctatactacctcattgtcaatgtcttacgccgacaacggttttt |
17805291 |
T |
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| Q |
231 |
aagagatcctgaagtcatgagttcctataggtaat |
265 |
Q |
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| T |
17805290 |
aagagatcccgaagtcatgacttcctataggtaat |
17805256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 17455745 - 17455697
Alignment:
| Q |
379 |
ataatcaaactgacttttgtaactttaatgtttgtatctttgaccacta |
427 |
Q |
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|||| |||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
17455745 |
ataaacaaactgactaaggtaactttaatgtctgtatctttgaccacta |
17455697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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