View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19306_high_9 (Length: 410)

Name: NF19306_high_9
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19306_high_9
NF19306_high_9
[»] chr8 (3 HSPs)
chr8 (1-393)||(41739669-41740067)
chr8 (137-190)||(33940437-33940490)
chr8 (352-388)||(17088591-17088627)
[»] chr1 (7 HSPs)
chr1 (137-364)||(21501077-21501298)
chr1 (202-364)||(8040728-8040889)
chr1 (39-93)||(9111654-9111708)
chr1 (312-365)||(147029-147082)
chr1 (346-389)||(38825292-38825335)
chr1 (150-189)||(38828683-38828722)
chr1 (132-189)||(43254179-43254236)
[»] chr3 (9 HSPs)
chr3 (134-364)||(26444921-26445145)
chr3 (137-393)||(2353265-2353515)
chr3 (132-189)||(9372208-9372265)
chr3 (132-219)||(19930008-19930089)
chr3 (312-388)||(42253391-42253467)
chr3 (132-219)||(42253534-42253615)
chr3 (352-390)||(38257445-38257483)
chr3 (312-388)||(19929866-19929942)
chr3 (312-388)||(42256647-42256723)
[»] chr2 (3 HSPs)
chr2 (226-392)||(27082885-27083055)
chr2 (146-364)||(65998-66210)
chr2 (196-393)||(8388246-8388444)
[»] chr6 (5 HSPs)
chr6 (8-132)||(4845909-4846033)
chr6 (311-364)||(28746393-28746446)
chr6 (132-190)||(2936143-2936201)
chr6 (132-190)||(19973732-19973790)
chr6 (132-190)||(24044928-24044986)
[»] scaffold0076 (1 HSPs)
scaffold0076 (8-81)||(6910-6983)
[»] chr7 (4 HSPs)
chr7 (132-190)||(2609597-2609655)
chr7 (137-190)||(15569635-15569688)
chr7 (132-190)||(13815802-13815860)
chr7 (132-189)||(15169999-15170056)
[»] chr4 (4 HSPs)
chr4 (137-189)||(11914059-11914111)
chr4 (137-188)||(31767445-31767496)
chr4 (324-374)||(13010351-13010401)
chr4 (132-190)||(19888148-19888206)


Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 41740067 - 41739669
Alignment:
Q  1 tctctcatagcaatttggagtgacacttcctgattagaaaaataccacttttccaccaacacaaaaactatttctttcttctcaatttttctttttgggt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |  ||    
T  41740067 tctctcatagcaatttggagtgacacttcctgatcagaaaaataccacttttccaccaacacaaaaactctttctttcttctcaatttttcttcctatgt 41739968  T
Q  101 tacattttacatgtttattaaattcaagttgtgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataac 200  Q
    |||||||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41739967 tacattttacatgtttatcaaatttaaactgtgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataac 41739868  T
Q  201 tgtttactattttgcaggttagatatgagttgttggtgaaggatattgatagagtcatgtcaggatcctaattatacaaaaatattaagaacaggtaagt 300  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41739867 tgtttactattttgcaggttagatatgagttgttagtgaagaatattgatagagtcatgtcaggatcctaattatacaaaaatattaagaacaggtaagt 41739768  T
Q  301 ctattgaaccttctcttttgcttatatttaattgttgttta------tatgtatatgttgattattatttagagataattatcatggctaatttatact 393  Q
    | ||||||||||||||||| |||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41739767 ccattgaaccttctcttttacttatatttaattgttgtttatatggatatgtatatgttgattattatttagagataattatcatggctaatttatact 41739669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 33940490 - 33940437
Alignment:
Q  137 ttatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  33940490 ttatgagacggataaatccttaaggacagtgacttcgtcaagcctcaggttata 33940437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 388
Target Start/End: Complemental strand, 17088627 - 17088591
Alignment:
Q  352 ttgattattatttagagataattatcatggctaattt 388  Q
    |||||||||||||||| |||||||||||| |||||||    
T  17088627 ttgattattatttagatataattatcatgactaattt 17088591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 137 - 364
Target Start/End: Complemental strand, 21501298 - 21501077
Alignment:
Q  137 ttatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggttagatatgagttgttgg 236  Q
    ||||||||||||||||||||||| ||||| |||||  ||||||||||  |||||      ||||| |||| |||||||||||||| ||||||||||||||    
T  21501298 ttatgagacggataaatccttaaagatagcgactttgtcacgcctcatattata------taactatttattattttgcaggttacatatgagttgttgg 21501205  T
Q  237 tgaaggatattgatagagtcatgtcaggatcctaattatacaaaaatattaagaacaggtaagtctattgaaccttctcttttgcttatatttaattgtt 336  Q
    ||||||| ||||| ||||| ||||||| |  |||  |||  |||| |||||||||||  ||||| ||| || |||||||||||||||||||| ||||| |    
T  21501204 tgaaggacattgacagagttatgtcagtactctagctatctaaaattattaagaacatataagtttatcgatccttctcttttgcttatattcaattgat 21501105  T
Q  337 gtttatatgtatatgttgattattattt 364  Q
    ||||||||||||||||| ||| ||||||    
T  21501104 gtttatatgtatatgttaatttttattt 21501077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 364
Target Start/End: Original strand, 8040728 - 8040889
Alignment:
Q  202 gtttactattttgcaggttagatatgagttgttggtgaaggatattgatagagtcatgtcaggatcctaattatacaaaaatattaagaacaggtaagtc 301  Q
    ||||| ||||||||| |||| |||| |||||||||||||| ||||||| ||||| ||||||| |  |||  |||| |||| ||||||| |||  |||||     
T  8040728 gtttattattttgcaagttacatataagttgttggtgaag-atattgacagagttatgtcagtactctagctatataaaattattaaggacatataagtt 8040826  T
Q  302 tattgaaccttctcttttgcttatatttaattgttgtttatatgtatatgttgattattattt 364  Q
    ||| || |||||||||||  ||||||| ||||| |||||||||||||||||| ||| ||||||    
T  8040827 tatcgatccttctcttttatttatattcaattgatgtttatatgtatatgttaatttttattt 8040889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 9111708 - 9111654
Alignment:
Q  39 aaaataccacttttccaccaacacaaaaactatttctttcttctcaatttttctt 93  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9111708 aaaataccacttttccaccaacacaaaaactctttctttcttcccaatttttctt 9111654  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 147082 - 147029
Alignment:
Q  312 tctcttttgcttatatttaattgttgtttatatgtatatgttgattattattta 365  Q
    |||||||| |||||||||||||| |  |||||| ||||||||||||||||||||    
T  147082 tctcttttacttatatttaattgattcttatatttatatgttgattattattta 147029  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 38825335 - 38825292
Alignment:
Q  346 tatatgttgattattatttagagataattatcatggctaattta 389  Q
    |||||||||||||||||||||||| ||||||| || ||||||||    
T  38825335 tatatgttgattattatttagagaaaattatcttgactaattta 38825292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 38828722 - 38828683
Alignment:
Q  150 aaatccttaaggatagtgacttcatcacgcctcaggttat 189  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  38828722 aaatccttaaggatagtgacttcgtcacgcctcaagttat 38828683  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 43254179 - 43254236
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttat 189  Q
    |||| ||||||| || ||||||||||||||| ||||||||  |||||||||| |||||    
T  43254179 tgcgcttatgaggcgaataaatccttaaggacagtgactttgtcacgcctcatgttat 43254236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 134 - 364
Target Start/End: Complemental strand, 26445145 - 26444921
Alignment:
Q  134 cgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggttagatatgagttgt 233  Q
    |||||||||| |||||||||||||||||| ||||||||  ||| |||||| ||||||      || | ||||| |||||||||||||| |||||||||||    
T  26445145 cgattatgaggcggataaatccttaaggacagtgactttgtcatgcctcatgttata------tatccgtttattattttgcaggttacatatgagttgt 26445052  T
Q  234 tggtgaaggatattgatagagtcatgtcaggatcctaattatacaaaaatattaagaacaggtaagtctattgaaccttctcttttgcttatatttaatt 333  Q
    |||||||||||||||||||||| ||||||| |  |||  |||  |||| || |||| |||| ||| | ||| || |||||||||||||||||||| ||||    
T  26445051 tggtgaaggatattgatagagttatgtcagtactctagctatctaaaattagtaaggacagataaatttatcgatccttctcttttgcttatattcaatt 26444952  T
Q  334 gttgtttatatgtatatgttgattattattt 364  Q
    | |||||||||||||||||| ||| ||||||    
T  26444951 gatgtttatatgtatatgttaatttttattt 26444921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 137 - 393
Target Start/End: Original strand, 2353265 - 2353515
Alignment:
Q  137 ttatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggttagatatgagttgttgg 236  Q
    ||||||| |||||||||||||||||| | ||||||||||| |||||||||||||      |||| ||||| |||||||||||||| ||||||||||||||    
T  2353265 ttatgaggcggataaatccttaaggacaatgacttcatcatgcctcaggttata------taacggtttattattttgcaggttacatatgagttgttgg 2353358  T
Q  237 tgaaggatattgatagagtcatgtcaggatcctaattatacaaaaatattaagaacaggtaagtctattgaaccttctcttttgcttatatttaattgtt 336  Q
    || || || ||||||||||  | | | |  | || |||||||  ||| |||||| ||  ||||| |||||| |  |||||||||||||||||||| || |    
T  2353359 tggagaatgttgatagagttgtat-atgtgcttagttatacatcaatgttaagagcatataagtttattgatctctctcttttgcttatatttaactgat 2353457  T
Q  337 gttta-tatgtatatgttgattattatttagagataattatcatggctaatttatact 393  Q
     |||  ||||||| ||||||||||||||||||||||||| | ||  ||||||||||||    
T  2353458 attttgtatgtatgtgttgattattatttagagataattcttatcactaatttatact 2353515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 9372265 - 9372208
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttat 189  Q
    |||| ||||||| || ||||||||||||||| ||||||||| ||| ||||||||||||    
T  9372265 tgcgcttatgaggcgaataaatccttaaggacagtgacttcgtcatgcctcaggttat 9372208  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 19930089 - 19930008
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggt 219  Q
    |||| ||||||| ||||||||||||||||||  |||||||  |||||||||| |||||      ||||| ||||||||||||||||||    
T  19930089 tgcgcttatgaggcggataaatccttaaggacggtgactttgtcacgcctcatgttat------ataacggtttactattttgcaggt 19930008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 42253467 - 42253391
Alignment:
Q  312 tctcttttgcttatatttaattgttgtttatatgtatatgttgattattatttagagataattatcatggctaattt 388  Q
    |||||||||||||||||| |||   || ||||||| ||  ||||||| ||||||||||||||||| ||| |||||||    
T  42253467 tctcttttgcttatattttattcacgtctatatgtttactttgattaatatttagagataattattatgactaattt 42253391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 42253615 - 42253534
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggt 219  Q
    |||| ||||||| ||| |||||||||||||| ||||||||  |||||||||| |||||      ||||| ||||||||||||||||||    
T  42253615 tgcgcttatgaggcgggtaaatccttaaggacagtgactttgtcacgcctcatgttat------ataacggtttactattttgcaggt 42253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 390
Target Start/End: Complemental strand, 38257483 - 38257445
Alignment:
Q  352 ttgattattatttagagataattatcatggctaatttat 390  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  38257483 ttgattattatctagagataattatcatgactaatttat 38257445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 19929942 - 19929866
Alignment:
Q  312 tctcttttgcttatatttaattgttgtttatatgtatatgttgattattatttagagataattatcatggctaattt 388  Q
    |||||||||||||||||| |||   || ||||||| ||  ||||||| |||||| |||||||||| ||| |||||||    
T  19929942 tctcttttgcttatatttgattcacgtgtatatgtttactttgattaatatttaaagataattattatgactaattt 19929866  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 42256723 - 42256647
Alignment:
Q  312 tctcttttgcttatatttaattgttgtttatatgtatatgttgattattatttagagataattatcatggctaattt 388  Q
    |||||||||||||||||| |||    | ||||||| ||  ||||||| ||||||||||||||||| ||| |||||||    
T  42256723 tctcttttgcttatatttgattcacatgtatatgtttactttgattaatatttagagataattattatgactaattt 42256647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 226 - 392
Target Start/End: Complemental strand, 27083055 - 27082885
Alignment:
Q  226 tgagttgttggtgaaggatattgatagagtcatgtcag-gatcctaattatacaaaaatattaagaacaggtaagtctattgaaccttctcttttgctta 324  Q
    |||||||||||||||||||||||||||||||||||||  || |||  ||||||||||||| || | |||| ||||| |||||| |  |||||||||||||    
T  27083055 tgagttgttggtgaaggatattgatagagtcatgtcattgaacctggttatacaaaaatactagggacagataagtttattgatctatctcttttgctta 27082956  T
Q  325 tatttaattgttgtttatatgtatatgt---tgattattatttagagataattatcatggctaatttatac 392  Q
    |||||||||| |||| ||||||||||||   | ||||||||||| |||||||||| ||| |||||||||||    
T  27082955 tatttaattgatgttcatatgtatatgttaattattattatttaaagataattattatgactaatttatac 27082885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 364
Target Start/End: Complemental strand, 66210 - 65998
Alignment:
Q  146 ggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggttagatatgagttgttggtgaaggata 245  Q
    ||||||||||||||  |||||||||| ||||||||||| |||||      | |||| |||| ||||||  | |||| |||||||||||||||||| ||||    
T  66210 ggataaatccttaaatatagtgactttatcacgcctcatgttat------acaactatttattattttataagttacatatgagttgttggtgaaagata 66117  T
Q  246 ttgatagagtcatgtcaggatcctaattatacaaaaatattaagaacaggtaagtctattgaaccttctcttttgcttatatttaattgttgtttatatg 345  Q
    |||| ||||| |||| || | ||||  |||  |||||||||||| | |  ||||| ||   | |||||||||||||||||||| ||||| ||| ||||||    
T  66116 ttgacagagttatgttagcaccctagctatctaaaaatattaaggatacataagtgtaaccatccttctcttttgcttatattcaattgatgtatatatg 66017  T
Q  346 tatatgttgattattattt 364  Q
     |||| || ||| ||||||    
T  66016 catatattaatttttattt 65998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 393
Target Start/End: Complemental strand, 8388444 - 8388246
Alignment:
Q  196 ataactgtttactattttgcaggttagatatgagttgttggtgaaggatattgatagagtcatgtcaggatcctaattatacaaaaatattaagaacagg 295  Q
    ||||| ||||| ||||||||| |||| ||||||||||||  || | ||| ||||||||||  | |||  | |||| |||||||| || ||| || |||      
T  8388444 ataacggtttattattttgcaagttatatatgagttgttaatggaagatgttgatagagttgtatcaacaacctagttatacaacaaaatttaggacata 8388345  T
Q  296 taagtctattgaac-cttctcttttgcttatatttaattgttgtttatatgtatatgttgattattatttagagataattatcatggctaatttatact 393  Q
    ||||| |||||| |  || | |||||||||||||| |||| || ||||||||| ||||||||||||| || ||||||||| | |||  |||||||||||    
T  8388344 taagtttattgatctttttttttttgcttatatttgattgatgattatatgtacatgttgattattacttggagataattcttatgaataatttatact 8388246  T

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Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 4846033 - 4845909
Alignment:
Q  8 tagcaatttggagtgacacttcctgattagaaaaataccacttttccaccaacacaaaaactatttctttcttctcaatttttctttttgggttacattt 107  Q
    ||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||  |||||||||| |    
T  4846033 tagcaatttggggagacacttcttgatcagaaaaataccacttttccaccaacacaaaagctctttctttcttcccaatttttcttcctgggttacatct 4845934  T
Q  108 tacatgtttattaaattcaagttgt 132  Q
      | ||||||| |||||||||||||    
T  4845933 cccgtgtttatcaaattcaagttgt 4845909  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 364
Target Start/End: Original strand, 28746393 - 28746446
Alignment:
Q  311 ttctcttttgcttatatttaattgttgtttatatgtatatgttgattattattt 364  Q
    ||||||||||||||| ||| |||| || ||||||||||||||||||||||||||    
T  28746393 ttctcttttgcttatgtttgattgatggttatatgtatatgttgattattattt 28746446  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 2936201 - 2936143
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||| ||||||| |||||||||||||||||| ||||||||| |||| ||||| ||||||    
T  2936201 tgcgcttatgaggcggataaatccttaaggacagtgacttcgtcacacctcatgttata 2936143  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 19973732 - 19973790
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||| ||||||| |||||||||| ||||||| ||||||||  |||||||||||||||||    
T  19973732 tgcgcttatgaggcggataaatctttaaggacagtgactttgtcacgcctcaggttata 19973790  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 24044986 - 24044928
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||| ||||||| || ||||||||||||||| ||||||||  |||||||||| ||||||    
T  24044986 tgcgcttatgaggcgaataaatccttaaggacagtgactttgtcacgcctcatgttata 24044928  T

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Target: scaffold0076 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 6983 - 6910
Alignment:
Q  8 tagcaatttggagtgacacttcctgattagaaaaataccacttttccaccaacacaaaaactatttctttcttc 81  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||||| ||| |||||||    
T  6983 tagcaatttggagagacacttcttgatcagaaaaataccacttttccaccaacataaaaactctttttttcttc 6910  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 2609655 - 2609597
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||| ||||||||| ||||||| |||||||||||||||||| |||||||||||||||||    
T  2609655 tgcgcttatgagacagataaatacttaaggatagtgacttcgtcacgcctcaggttata 2609597  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 15569635 - 15569688
Alignment:
Q  137 ttatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    ||||||| ||||||||||| |||||| ||||||||  |||||||||||||||||    
T  15569635 ttatgaggcggataaatccctaaggacagtgactttgtcacgcctcaggttata 15569688  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 13815802 - 13815860
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||| ||||||| || ||||||||||||||| ||||||||  |||||||||| ||||||    
T  13815802 tgcgcttatgaggcgaataaatccttaaggacagtgactttgtcacgcctcatgttata 13815860  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 15169999 - 15170056
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttat 189  Q
    |||| ||||||| | |||||||  ||||||| ||||||||||||||| ||||||||||    
T  15169999 tgcgtttatgaggctgataaatttttaaggacagtgacttcatcacgtctcaggttat 15170056  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 11914111 - 11914059
Alignment:
Q  137 ttatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttat 189  Q
    |||||||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  11914111 ttatgagacggataaatccttaaggataatgacttcgtcacgccttaggttat 11914059  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 31767496 - 31767445
Alignment:
Q  137 ttatgagacggataaatccttaaggatagtgacttcatcacgcctcaggtta 188  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||| ||||    
T  31767496 ttatgaggcggataaatccttaaggatagtgattttgtcacgcctcatgtta 31767445  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 13010401 - 13010351
Alignment:
Q  324 atatttaattgttgtttatatgtatatgttgattattatttagagataatt 374  Q
    ||||||||||| ||||| ||| ||||||  |||||||||||||||||||||    
T  13010401 atatttaattgatgtttttatttatatgaagattattatttagagataatt 13010351  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 19888206 - 19888148
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||| ||||||| |||||||||||||||||| ||||   ||| ||||||||||||||||    
T  19888206 tgcgcttatgaggcggataaatccttaaggacagtgcgatcagcacgcctcaggttata 19888148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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