View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_low_10 (Length: 422)
Name: NF19306_low_10
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 7807929 - 7808270
Alignment:
| Q |
19 |
gtagttacaataatattagatatgtcatgaaccaatatttacaagtaaggacaatcatcatcttattagttggatttataagtgagaacaattattattt |
118 |
Q |
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| T |
7807929 |
gtagttacaataatcttagatatgccatgaatcaatgtttacaagtaaggacaatcatcatcttactagtctgatttataagtgagaacaattattattt |
7808028 |
T |
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| Q |
119 |
tacaagttagttttgtaaattaacaagctggnnnnnnnaggttaagtccaacccaaattttaaaatagtattagagtctatcaaatatc---------at |
209 |
Q |
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| T |
7808029 |
tacaagttagttttgtaaattaacaagttggtttttttaggttaagtccaacccaaattctaaaatagtattagagtctatcaaatatcatttcgattat |
7808128 |
T |
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| Q |
210 |
ttgttatcatatgttatcaggtcatcattatcaaaccacttgatcacattccagatgtctcgtcctagttctatgtgtgttaagagtctcacttgaatga |
309 |
Q |
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| T |
7808129 |
ttgttatcatatgttatcaggtcatcattattaaaccacttggtcacatttcaggtgtctcgtcttagtcttatgtgtgttaagagtttcacttaaatga |
7808228 |
T |
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| Q |
310 |
tatatgacctcaattattatcttacaaactagttttataaac |
351 |
Q |
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|||||| ||||||| ||||| |||||||||||||||| |||| |
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| T |
7808229 |
tatatggcctcaatcattattttacaaactagttttacaaac |
7808270 |
T |
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