View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_low_12 (Length: 410)
Name: NF19306_low_12
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 295058 - 294658
Alignment:
| Q |
1 |
actacttcagtttcaagaattatcagacatgcagagatgggagtttcttctttttggtggactcatatggatatacttaactgcaagaccaggtgttctt |
100 |
Q |
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| T |
295058 |
actacttcagtttcaagaattatcagacatgcagagatgggagtttcttctttttggtggactcatatggatatacttaactgcaagaccaggtgttctt |
294959 |
T |
|
| Q |
101 |
attggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaatttgaagactggtgattttcttgttggag |
200 |
Q |
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| T |
294958 |
attggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaacttgaagactggtgattttcttgttggag |
294859 |
T |
|
| Q |
201 |
ataaaatcggtgaagggtcatttggtgttgtttattctggtgttttgatctcaaagaatgtggtggatgttgaggaggaaaagagaggaagatccaaggc |
300 |
Q |
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| T |
294858 |
ataaaatcggtgaagggtcatttggtgttgtttattctggtgttttgatctcaaagaatgtggtggatgttgaggaggacaagagaggaagatccaaggc |
294759 |
T |
|
| Q |
301 |
aacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatcattaacccctttcttgttgtctaaataaaattgaattttagtata |
400 |
Q |
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| T |
294758 |
aacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatcattaaccccttacttgttgtctaaataaaattgaattttagtata |
294659 |
T |
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| Q |
401 |
a |
401 |
Q |
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| T |
294658 |
a |
294658 |
T |
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Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 78 - 247
Target Start/End: Original strand, 27490712 - 27490881
Alignment:
| Q |
78 |
taactgcaagaccaggtgttcttattggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaatttgaa |
177 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| | ||| ||| ||| || | | |||||||||||||||||||||| |
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| T |
27490712 |
taactgcaagaccaggtgttcttattggtgctattgatgcataccttttggctccaatgcaatttgttttggatagtttatctggaaggagaaatttgaa |
27490811 |
T |
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| Q |
178 |
gactggtgattttcttg-ttggagataaaatcggtgaagggtcatttggtgttgtttattctggtgttttg |
247 |
Q |
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|| |||| ||||||| |||| | ||| || || |||||||||||||||||||||||||||| ||||||| |
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| T |
27490812 |
gaggagtga-tttcttgattggtggtaagataggagaagggtcatttggtgttgtttattctgctgttttg |
27490881 |
T |
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