View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_low_14 (Length: 355)
Name: NF19306_low_14
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 340
Target Start/End: Complemental strand, 41968375 - 41968032
Alignment:
| Q |
10 |
gaaggaagtcttaaaccagaaggtattgatttaattaaggatatagcttcactcataaataaattttacaaaagatattgttgatataaaatctataatn |
109 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41968375 |
gaaggaagtcttaaaccagaaggtattgatttaatgaaggatatagcttcactcataaataaattttacaaaagatattgttgatataaaatctataata |
41968276 |
T |
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| Q |
110 |
nnnnnnntctttctttactttttatttattgttaaaatttgatgttacaacattcattcactaaaatgatgtactaa--aat-----------gaaattg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
41968275 |
aaaaaaatctttctttactttttatttattgttaaaatttgatgttacaacattcattcactaaaatgatgtactaactaatattgcatggttgaaattg |
41968176 |
T |
|
| Q |
197 |
tagaatgtgctcctcgatgtgaagatagatgctcaaaaacacatcacaaaaaaccatgtttgttctattgcaagtattgttgtgcaaaatgcttgtgtgt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41968175 |
tagaatgtgctcctcgatgtgaagatagatgctcaaaaacacatcacaaaaaaccatgtttgttctattgcaagtattgttgtgccaaatgcttgtgtgt |
41968076 |
T |
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| Q |
297 |
acctccaggaacttatggaaacaaggaagtttgtccgtgctata |
340 |
Q |
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| T |
41968075 |
acctccaggaacttatggaaacaaggaagtttgtccgtgctata |
41968032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 16100168 - 16100246
Alignment:
| Q |
261 |
ctattgcaagtattgttgtgcaaaatgcttgtgtgtacctccaggaacttatggaaacaaggaagtttgtccgtgctat |
339 |
Q |
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| T |
16100168 |
ctattgcaactactgttgtgcaaaatgtttgtgtgtcccatcaggaacatatggtcacaaggaagaatgtccatgctat |
16100246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 16047017 - 16047081
Alignment:
| Q |
261 |
ctattgcaagtattgttgtgcaaaatgcttgtgtgtacctccaggaacttatggaaacaaggaag |
325 |
Q |
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| T |
16047017 |
ctattgcaactactgttgtgcaaaatgtttgtgtgtcccatcaggaacatatggtcacaaggaag |
16047081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 189 - 340
Target Start/End: Complemental strand, 1235191 - 1235040
Alignment:
| Q |
189 |
tgaaattgtagaatgtgctcctcgatgtgaagatagatgctcaaaaacacatcacaaaaaaccatgtttgttctattgcaagtattgttgtgcaaaatgc |
288 |
Q |
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| T |
1235191 |
tgaaattgtagaatgtgctcctcgatgtgaagatagatgctcaaaaacacatcacagaaaaccatgtttgttctattgcaagtattgttgtgcaaaatgc |
1235092 |
T |
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| Q |
289 |
ttgtgtgtacctccaggaacttatggaaacaaggaagtttgtccgtgctata |
340 |
Q |
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| T |
1235091 |
ttgtgtgtacctccaggaacttatggaaacaaggaagtttgtccgtgctata |
1235040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 1235409 - 1235334
Alignment:
| Q |
10 |
gaaggaagtcttaaaccagaaggtattgatttaattaaggatatagcttcactcataaataaattttacaaaagat |
85 |
Q |
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| T |
1235409 |
gaaggaagtcttaaaccagaaggtattgatttaatgaaggatatagcttcactcataaataaattttacaaaagat |
1235334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 1235278 - 1235232
Alignment:
| Q |
121 |
tctttactttttatttattgttaaaatttgatgttacaacattcatt |
167 |
Q |
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| T |
1235278 |
tctttattttttgtttattgttaaaatttgatgttacaacattcatt |
1235232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 35408853 - 35408953
Alignment:
| Q |
240 |
tcacaaaaaaccatgtttgttctattgcaagtattgttgtgcaaaatgcttgtgtgtacctccaggaacttatggaaacaaggaagtttgtccgtgctat |
339 |
Q |
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|||||| || || |||||||||| ||||| | |||||||||||||| |||||||| || | ||||||||||| ||||| ||| |||||||||||| |
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| T |
35408853 |
tcacaagaagccgtgtttgttcttctgcaaaaagtgttgtgcaaaatgtttgtgtgttccatctggaacttatggcaacaaacaagaatgtccgtgctat |
35408952 |
T |
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| Q |
340 |
a |
340 |
Q |
| |
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| T |
35408953 |
a |
35408953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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