View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19306_low_17 (Length: 303)
Name: NF19306_low_17
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_17 |
 | |
|
| [»] scaffold0913 (1 HSPs) |
| | |
|
| [»] scaffold0898 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 36098846 - 36099119
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttctcgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36098846 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcagctaatttctcgat |
36098945 |
T |
|
| Q |
116 |
ttttgtataaatactagattgtgttaaacacatttaggtaatgaaatgctataacttcttttcctnnnnnnnctaaaataatgtgattaaccattttcaa |
215 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36098946 |
ttttgtataaatactagattgtgttgaacacatttaggtaatgaaatgctataacttcttttcctaaaaaaactaaaataatgtgattaaccattttcaa |
36099045 |
T |
|
| Q |
216 |
ataaataattcgacatctatccttccttatcaaactcccttcatggtttatggaatttatacctagcaaaagat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36099046 |
ataaataattcgacatctatccttccttatcaaactcccttcatggtttatgtaatttatacctagcaaaagat |
36099119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 18579590 - 18579520
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaag |
86 |
Q |
| |
|
|||||||||| |||| |||||||||||| |||| |||||| ||||||| ||| | |||||||||| |||| |
|
|
| T |
18579590 |
aatattatgtcaactttagtgttgagtttgtgaggagacaaacaaatgaggcagcccatagattagctaag |
18579520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 5849183 - 5849244
Alignment:
| Q |
20 |
ttatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattag |
81 |
Q |
| |
|
|||||| |||| |||||||||||| |||| |||||| ||||||| ||| |||||||||||| |
|
|
| T |
5849183 |
ttatgtcaactctagtgttgagtttgtgaggagacaaacaaatgaggcagctcatagattag |
5849244 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 44022234 - 44022347
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttctcgat |
115 |
Q |
| |
|
|||| ||||| |||| |||||||||||| ||||||||||| ||||||| || ||||||||||||||||| ||||||| ||||| ||| ||||| ||| |
|
|
| T |
44022234 |
aatactatgtcaactctagtgttgagtttgtgagaagacaaacaaatgagacagctcatagattagttaaggtggtcacatcctcagctagtttctagat |
44022333 |
T |
|
| Q |
116 |
ttttgtataaatac |
129 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
44022334 |
tttggtagaaatac |
44022347 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 12751148 - 12751082
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagt |
82 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
12751148 |
aatattatgtaaactctagtattgagtttatgagaagacacgcaaatgacgcaactcatagattagt |
12751082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 42132083 - 42132153
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaag |
86 |
Q |
| |
|
|||||||| | |||| |||||||||||| |||| |||||| ||||||| ||||| |||||||||| |||| |
|
|
| T |
42132083 |
aatattatatcaactctagtgttgagtttgtgaggagacaaacaaatgaggcaacccatagattagctaag |
42132153 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 48026170 - 48026023
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttctcgat |
115 |
Q |
| |
|
|||||||||| |||| ||||||||||||| ||| |||||||||||||| ||| | |||||||||| |||| || ||| | ||||||| ||| | ||| |
|
|
| T |
48026170 |
aatattatgtcaactctagtgttgagtttacgaggagacaagcaaatgaagcagcccatagattagctaaggcgaccacgtcttcaactagtttttagat |
48026071 |
T |
|
| Q |
116 |
ttttgtataaatactagattgtgttaaacaca-tttaggtaatgaaat |
162 |
Q |
| |
|
||| ||| |||||| ||||||| || |||||| |||| |||||||||| |
|
|
| T |
48026070 |
tttggtagaaataccagattgtattgaacacattttaagtaatgaaat |
48026023 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 39774909 - 39775008
Alignment:
| Q |
19 |
attatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttctcgatttt |
118 |
Q |
| |
|
||||||| |||| |||||||||||| |||| |||||| ||||| | |||| ||||||||| |||| ||| |||| ||||||||||||| | |||||| |
|
|
| T |
39774909 |
attatgtcaactttagtgttgagtttgtgaggagacaaacaaataaggcaatccatagattaactaaggcggccacatcctcaactaatttttagatttt |
39775008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 26754924 - 26755026
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttctcgat |
115 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||| |||||||||||||| ||| | ||||||||| |||| ||| |||| ||||||||| ||| | ||| |
|
|
| T |
26754924 |
aatattatgtcaactatagtgttgagtttgtgaggagacaagcaaatgaggcagcccatagattatctaaggcggccacatcctcaactagtttttagat |
26755023 |
T |
|
| Q |
116 |
ttt |
118 |
Q |
| |
|
||| |
|
|
| T |
26755024 |
ttt |
26755026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 13596964 - 13597066
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttctcgat |
115 |
Q |
| |
|
|||| ||||| |||| |||||||||||| |||| |||||||||||||| ||| | | |||||||| |||| ||| || | ||||||||| ||||| ||| |
|
|
| T |
13596964 |
aatactatgtcaactctagtgttgagtttgtgaggagacaagcaaatgaggcagcccctagattagctaaggcggccatatcctcaactagtttctagat |
13597063 |
T |
|
| Q |
116 |
ttt |
118 |
Q |
| |
|
||| |
|
|
| T |
13597064 |
ttt |
13597066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 26036880 - 26036832
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatga |
64 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||| ||||||| |
|
|
| T |
26036880 |
aatattatgttaacttcagtgttgagtttataagaaggcaaacaaatga |
26036832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 10260475 - 10260628
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttctcgat |
115 |
Q |
| |
|
|||| ||||| |||| |||||||||||| ||| |||||||||||||| | | | |||||||| | |||| ||| |||| ||| |||| ||||| ||| |
|
|
| T |
10260475 |
aatactatgtcaactctagtgttgagtttctgaagagacaagcaaatgaggtagcccatagatttgctaaggcggccacatccttgactagtttctagat |
10260574 |
T |
|
| Q |
116 |
ttttgtataaatactagattgtgttaaacacatttaggtaatgaaatgctataa |
169 |
Q |
| |
|
||| ||| |||||| ||||||| || ||||| |||| ||||||||||| ||||| |
|
|
| T |
10260575 |
tttggtaaaaataccagattgtattgaacacttttaagtaatgaaatgatataa |
10260628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 17834450 - 17834296
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttctcgat |
115 |
Q |
| |
|
|||| ||||| |||| |||||||||||| |||| |||||| ||||||| |||| |||||||||| |||| ||| |||| ||||| ||| |||| ||| |
|
|
| T |
17834450 |
aatactatgtcaactctagtgttgagtttgtgaggagacaaacaaatgagacaacccatagattagctaaggcggccacatcctcagctagtttccagat |
17834351 |
T |
|
| Q |
116 |
ttttgtataaatactagattgtgttaaacaca-tttaggtaatgaaatgctataa |
169 |
Q |
| |
|
||| || ||||| ||| ||| || |||||| |||| ||||||||||| ||||| |
|
|
| T |
17834350 |
tttgatagaaatatcagaatgtattgaacacattttaagtaatgaaatgatataa |
17834296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 8871928 - 8871880
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatga |
64 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| | |||||||||||| |
|
|
| T |
8871928 |
aatattatgttaactttagtgttgagtttgtgaggatacaagcaaatga |
8871880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 15610155 - 15610309
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttctcgat |
115 |
Q |
| |
|
|||| ||||| |||| |||||||||||| |||| |||||| ||||||| | | | |||||||||| ||||||| |||| ||||||||| | || ||| |
|
|
| T |
15610155 |
aatactatgtcaactctagtgttgagtttgtgaggagacaaacaaatgaggtagcccatagattagctaagacgaccacatcctcaactagtatccagat |
15610254 |
T |
|
| Q |
116 |
ttttgtataaatactagattgtgttaaacaca-tttaggtaatgaaatgctataa |
169 |
Q |
| |
|
||| || ||| |||||||||| || |||||| |||| ||||||||||| ||||| |
|
|
| T |
15610255 |
tttgatagaaacactagattgtattgaacacattttaagtaatgaaatgatataa |
15610309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 17237510 - 17237356
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttctcgat |
115 |
Q |
| |
|
|||| ||||| |||| |||||||||||| |||| || ||| ||||||| ||| | ||||||| ||||||| || |||| ||||| ||| |||| ||| |
|
|
| T |
17237510 |
aatactatgtcaactctagtgttgagtttgtgaggaggcaaacaaatgaggcagcacatagataagttaaggaggccacatcctcagctagtttccagat |
17237411 |
T |
|
| Q |
116 |
ttttgtataaatactagattgtgttaaacaca-tttaggtaatgaaatgctataa |
169 |
Q |
| |
|
||| |||||||||| ||||| | || |||||| |||| ||||||||||| ||||| |
|
|
| T |
17237410 |
tttggtataaataccagattatattgaacacattttaagtaatgaaatgatataa |
17237356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 52585698 - 52585544
Alignment:
| Q |
16 |
aatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttctcgat |
115 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||| |||||||||||||| ||| | ||||||||| |||| ||| |||| ||||| ||| |||| ||| |
|
|
| T |
52585698 |
aatattatgtcaactctagtgttgagttcgtgatgagacaagcaaatgaggcagcccatagattaactaaggcggccacatcctcagctagtttccagat |
52585599 |
T |
|
| Q |
116 |
ttttgtataaatactagattgtgttaaacaca-tttaggtaatgaaatgctataa |
169 |
Q |
| |
|
||| ||| ||||| |||||| || |||||| |||| ||||||||||| ||||| |
|
|
| T |
52585598 |
tttggtagaaatatcggattgtattgaacacattttaagtaatgaaatgatataa |
52585544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 20685459 - 20685527
Alignment:
| Q |
18 |
tattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaag |
86 |
Q |
| |
|
|||||||| |||| |||||||||||| |||| |||||||||||||| || | |||||||||| |||| |
|
|
| T |
20685459 |
tattatgtcaactctagtgttgagtttgtgaggagacaagcaaatgagacagcccatagattagctaag |
20685527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0913 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0913
Description:
Target: scaffold0913; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 3590 - 3683
Alignment:
| Q |
17 |
atattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttc |
110 |
Q |
| |
|
||||||||| |||| |||||||| ||| |||| |||||||||||||| || ||| |||||||| |||||||| |||| ||||| ||| |||| |
|
|
| T |
3590 |
atattatgtgaactctagtgttgaatttgtgaggagacaagcaaatgagccatctcgtagattagctaagacggccacatcctcatctagtttc |
3683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0898 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0898
Description:
Target: scaffold0898; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 2011 - 1918
Alignment:
| Q |
17 |
atattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcaactaatttc |
110 |
Q |
| |
|
||||||||| |||| |||||||| ||| |||| |||||||||||||| || ||| |||||||| |||||||| |||| ||||| ||| |||| |
|
|
| T |
2011 |
atattatgtgaactctagtgttgaatttgtgaggagacaagcaaatgagccatctcgtagattagctaagacggccacatcctcatctagtttc |
1918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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