View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_low_18 (Length: 295)
Name: NF19306_low_18
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 43347944 - 43348197
Alignment:
| Q |
18 |
acacatccctcatgaatgcttcaaaacacaattctaatcctaaattctagttctaattctaatctaagcatttgccataaatagccatttctttgcaatt |
117 |
Q |
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| T |
43347944 |
acacatccctcatgaatgcttcaaaacacaattctaatcctaaattctagttctaattctaatctaagcatttgccataaatagccatttctttgcaatt |
43348043 |
T |
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| Q |
118 |
tgtcacagtcttggtgatttactgatttcattcttgtattgaattgaatcaaattactattatcttataataaatgaaatgataataaatttccatgaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43348044 |
tgtcacagtcttggtgatttactgatttcattcttgtattgaattgaatcaaattactattatcttataataaatgaaatgataataaatttccatgaac |
43348143 |
T |
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| Q |
218 |
acgatgctaattgtacacttctatcatattactcaactaaatactcattcacat |
271 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43348144 |
acgatgctagttgtacacttctatcatattactcaactaaatactcattcacat |
43348197 |
T |
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