View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_low_2 (Length: 638)
Name: NF19306_low_2
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Original strand, 1155747 - 1156367
Alignment:
| Q |
1 |
taatgtggagaggaaagaaatgtaactgattttacatatatgtgtttctaaactcaaaattaagatcttaaaacggtagtgccaaaaatgatataacaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1155747 |
taatgtggagaggaaagaaatgtaactgattttacatatatgtgtttctaaactcaaaattaagatcttaaaacggtagtgccaaaaatgatataacaat |
1155846 |
T |
|
| Q |
101 |
aacaaaatagtagtctagaaatgtttttcattacaagcttcctctaaggctattaacatctcttaaacaaacaacataaagttaatggttcccattcctc |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
1155847 |
aacaaaatagtaatctagaaatgtttttcattacaagcttcctctaaggctct-aacatatcttatacaaacaacataaagttaatggttcccattcctc |
1155945 |
T |
|
| Q |
201 |
atgcctaattacttaggttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatatgctgtaactctgcataaacata |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1155946 |
atgcttaattacttaggttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatatgctgtaactctgcacaaacata |
1156045 |
T |
|
| Q |
301 |
acagtgtgaaatcagcaactgatgcataatcagtctagtgtgaaaactttaaacagtacataggtaaaacagagaaggtgataaatctatatagttctaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
1156046 |
acagtgtgaaatcagcaactgatgcataatcagtctagtgtgaaaactttaaacagtacataggtaaaacagtgaaggtgataaatctatatagttttaa |
1156145 |
T |
|
| Q |
401 |
ctctcttatattttacctcttcggtgccaatagtgacaactttttcctccaagtcatcaagaggagttttgaaacggttatgcaaatataaagatgaaat |
500 |
Q |
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| T |
1156146 |
ctctcttata-tttacctcttcggtgccaatagtgacaactttttcctccaaatcatcaagaggagttttgaaacggttatgcaaatataaagatgaaat |
1156244 |
T |
|
| Q |
501 |
tggagacaaccaaggttctatgaccagatcatccgtaaccaaatacatttgtgatcttttgacataatcgtcatctgtaactagttccatttttgaaaaa |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1156245 |
tggagacaaccaaggttctatgaccagatcatccgtaaccaaatacatttgtgatcttttgacataatcttcatctgtaactagttccatttttgaaaaa |
1156344 |
T |
|
| Q |
601 |
gttcccccaccactccaatcttc |
623 |
Q |
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||| ||||||||||||||||||| |
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| T |
1156345 |
gttaccccaccactccaatcttc |
1156367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 413 - 564
Target Start/End: Original strand, 23250431 - 23250582
Alignment:
| Q |
413 |
ttacctcttcggtgccaatagtgacaactttttcctccaagtcatcaagaggagttttgaaacggttatgcaaatataaagatgaaattggagacaacca |
512 |
Q |
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||||||||| | |||| || |||||||||||||||||||| ||||||| ||| ||||||||||| | | | | || || |||||||| |||||||||| | |
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| T |
23250431 |
ttacctctttgatgccgatggtgacaactttttcctccaaatcatcaataggtgttttgaaacgttgaagtacatgtatagatgaaactggagacaacaa |
23250530 |
T |
|
| Q |
513 |
aggttctatgaccagatcatccgtaaccaaatacatttgtgatcttttgaca |
564 |
Q |
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| T |
23250531 |
gggttctacgatcagatcatccgtaaccacatacatttctggtctcttgaca |
23250582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 23284254 - 23284329
Alignment:
| Q |
217 |
gttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatatgctgtaactctgca |
292 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||| |
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| T |
23284254 |
gttaacaagtgacggagaccattcgttagagcaggcgttgagcttaaagctgccttgaatatgttgtgactctgca |
23284329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 413 - 550
Target Start/End: Original strand, 23284414 - 23284551
Alignment:
| Q |
413 |
ttacctcttcggtgccaatagtgacaactttttcctccaagtcatcaagaggagttttgaaacggttatgcaaatataaagatgaaattggagacaacca |
512 |
Q |
| |
|
||||||||| | ||||||| |||||||||||||||||||| | ||||| ||| |||||||||| | | | | ||||| |||||||| |||||||| | | |
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| T |
23284414 |
ttacctctttgatgccaatggtgacaactttttcctccaaattatcaataggtattttgaaacgttgaagtacatatatagatgaaactggagacatcaa |
23284513 |
T |
|
| Q |
513 |
aggttctatgaccagatcatccgtaaccaaatacattt |
550 |
Q |
| |
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| T |
23284514 |
cggttctacaatcagatcatccgtaaccacatacattt |
23284551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 23250084 - 23250179
Alignment:
| Q |
217 |
gttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatatgctgtaactctgcataaacataacagtgtgaaat |
312 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||| || |||||| | |||| |||| |||||||| |
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| T |
23250084 |
gttaacaagtgacggagaccattcgttagagcagacgttgagcataaagcagccttaaatatgttgcgactctgaaccaacacaacaatgtgaaat |
23250179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 413 - 563
Target Start/End: Original strand, 23283041 - 23283191
Alignment:
| Q |
413 |
ttacctcttcggtgccaatagtgacaactttttcctccaagtcatcaagaggagttttgaaacggttatgcaaatataaagatgaaattggagacaacca |
512 |
Q |
| |
|
||||||||||| ||||||| |||| |||||||| |||||| |||| || ||| ||||||||||| | | | | |||| ||||||| || |||||||| | |
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| T |
23283041 |
ttacctcttcgatgccaatggtgagaacttttttctccaaatcattaataggtgttttgaaacgttgaagtacgtatatagatgaagttcgagacaacaa |
23283140 |
T |
|
| Q |
513 |
aggttctatgaccagatcatccgtaaccaaatacatttgtgatcttttgac |
563 |
Q |
| |
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||| ||| || ||||||||||||||| | |||||||| || ||| ||||| |
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| T |
23283141 |
tggtactaggatcagatcatccgtaactacatacatttctggtctcttgac |
23283191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 23321509 - 23321571
Alignment:
| Q |
216 |
ggttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatat |
278 |
Q |
| |
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||||| |||||||| ||||||||| |||||||||||||||||| ||||||| || |||||||| |
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| T |
23321509 |
ggttaacaagtgactgagaccatttgttagagcagatgttgaggttaaagcagctttcaatat |
23321571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 470
Target Start/End: Original strand, 22632706 - 22632764
Alignment:
| Q |
412 |
tttacctcttcggtgccaatagtgacaactttttcctccaagtcatcaagaggagtttt |
470 |
Q |
| |
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|||||||| | ||||||||| |||||||||||||||| ||| |||| |||||||||||| |
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| T |
22632706 |
tttacctccttggtgccaatggtgacaactttttccttcaaatcattaagaggagtttt |
22632764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 22626470 - 22626402
Alignment:
| Q |
412 |
tttacctcttcggtgccaatagtgacaactttttcctccaagtcatcaagaggagttttgaaacggtta |
480 |
Q |
| |
|
|||||||| | | ||||||| |||| ||||||||||| ||| |||| ||||||||| || ||||||||| |
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|
| T |
22626470 |
tttacctccttgatgccaattgtgataactttttccttcaattcattaagaggagtattcaaacggtta |
22626402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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