View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_low_24 (Length: 248)
Name: NF19306_low_24
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 34361122 - 34361026
Alignment:
| Q |
113 |
tataagatgcagcagaagttggacttctaaaagcctcagtccatactagcatcttgaacagaactaagtaaacatgcattgtatacatagagatagg |
209 |
Q |
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| T |
34361122 |
tataagatgcagcagaagttggacttttaaaagcctcagtccatgctagcatcttgaacagagctaagtaaacatgcattgtatacatagagatagg |
34361026 |
T |
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 25291747 - 25291656
Alignment:
| Q |
113 |
tataagatgcagcagaagttggacttctaaaagcctcagtccatactagcatcttgaacagaactaagtaaacatgcattgtatacatagag |
204 |
Q |
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| T |
25291747 |
tataagatgcagcaaaagttggacttctaaaagccttagttcatgctaacatcttcaacagaacaaagtaaagatacatcgcatacatagag |
25291656 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 37166998 - 37166934
Alignment:
| Q |
1 |
tggtaaacatgatgagacagag--tctggtcaacaaaggcacaagatcttgaatacgaaaatcca |
63 |
Q |
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| T |
37166998 |
tggtaaatataatgagacagagagtctgttcaacaaaggcacaagatcatgaatacgaaaatcca |
37166934 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 31807855 - 31807812
Alignment:
| Q |
113 |
tataagatgcagcagaagttggacttctaaaagcctcagtccat |
156 |
Q |
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| T |
31807855 |
tataagatgcagcaaaagttgaacttctaaaagccttagtccat |
31807812 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 12118430 - 12118470
Alignment:
| Q |
19 |
agagtctggtcaacaaaggcacaagatcttgaatacgaaaa |
59 |
Q |
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| T |
12118430 |
agagtctgttcaacaaagacacaagatcctgaatacgaaaa |
12118470 |
T |
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