View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_low_28 (Length: 232)
Name: NF19306_low_28
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_28 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: scaffold0267 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 5587 - 5391
Alignment:
| Q |
21 |
aataacgttatatttcagttgcttgtacttgatcatatttatttcaattacattaccaattccaaatccaattattgctgctgttctatttcttcctgtt |
120 |
Q |
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| T |
5587 |
aataacgttatatttcaattgcttgtacttgatcatatttatttcaattacattaccaattccaaatccaattattgctgctgttctatttcttcctgtt |
5488 |
T |
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| Q |
121 |
tactagtaactattccattcaatggtgcttataacactacgtactgccgtggcttccttcttttttattttagagtatctatcactttgcttctctg |
217 |
Q |
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| T |
5487 |
tactagtaactattccattcaatggtgcttataacactacgtactgccgtggcttccttcttttttattttagggtatctatcactttgcttctctg |
5391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 3792096 - 3791895
Alignment:
| Q |
19 |
aaaataacgttatatttcagttgcttgtacttgatcatatttatttcaattacattaccaattccaaatccaattattgctgctgttctatttcttcctg |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3792096 |
aaaataacgttatatttcaattgcttgtacttgatcatatttatttcaattacgttaccaattccaaatccaattattgctgctgttctatttcttcctg |
3791997 |
T |
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| Q |
119 |
tttactagtaactattccattcaatggt----gcttataacactacgtactgccgtggcttccttcttttttattttagagtatctatcactttgcttct |
214 |
Q |
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| T |
3791996 |
tttacgagtgactattccattcaatggtgcttgcttataacactacgtactgccgtggcttccttc-tttttattttagagtatctatcactttgcttct |
3791898 |
T |
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| Q |
215 |
ctg |
217 |
Q |
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||| |
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| T |
3791897 |
ctg |
3791895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 3829900 - 3829699
Alignment:
| Q |
19 |
aaaataacgttatatttcagttgcttgtacttgatcatatttatttcaattacattaccaattccaaatccaattattgctgctgttctatttcttcctg |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3829900 |
aaaataacgttatatttcaattgcttgtacttgatcatatttatttcaattacattaccaattccaaatccaattattgctgctgttctatttcttcctg |
3829801 |
T |
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| Q |
119 |
tttactagtaactattccattcaatgg----tgcttataacactacgtactgccgtggcttccttcttttttattttagagtatctatcactttgcttct |
214 |
Q |
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||||| ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3829800 |
tttacgagtgactattccattcgatggtgcttgcttataacactacgtactgccgtggcttccttc-tttttattttagagtatctatcactttgcttct |
3829702 |
T |
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| Q |
215 |
ctg |
217 |
Q |
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||| |
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| T |
3829701 |
ctg |
3829699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 3779274 - 3779353
Alignment:
| Q |
41 |
gcttgtacttgatcatatttatttcaattacattaccaattccaaatccaattattgctgctgttctatttcttcctgtt |
120 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3779274 |
gcttgtacttgatcatatttatttcaagtacattaccgattccaaatccaattgttgctgctgttctatttcttcctgtt |
3779353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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