View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19306_low_3 (Length: 612)
Name: NF19306_low_3
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 509; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 37 - 606
Target Start/End: Original strand, 13212330 - 13212899
Alignment:
| Q |
37 |
ttacaaggtagaattaacaccctgatacactcgattgagttaaaacatctgtaaatgcaagtataattttagttataggaacttaa-ttttaaacactgc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13212330 |
ttacaaggtagaattaacaccctgatacactcgattgagttaaaacatctgtaaatgcaagtataattttagttataggaacttaaattttaaacactgc |
13212429 |
T |
|
| Q |
136 |
ataactaattagtgcttcacctttcaaa-ttgtatttgttatagggttattaattattgtacgtaattttatactctactatgtgttctgtaatgaaatt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13212430 |
ataactaattagtgcttcacctttcaaaattgtatttgttatagggttattatttattgtacgtaattttatactctact--gtgttctgtaatgaaatt |
13212527 |
T |
|
| Q |
235 |
ttcagctcaatgaacaatgatgtttctactctactgtgtaggttctatttgtccacaaatatagtggttctatggctcttgaaactgcaatccccataac |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212528 |
ttcagctcaatgaacaatgatgtttctactctactgtgtaggttctatttgtccacaaatatagtggttctatggctcttgaaactgcaatccccataac |
13212627 |
T |
|
| Q |
335 |
cctaagttattttctctcatctgcaactatgatctatgctcaacacctcacattgaatcttccagaaccatcaatcgatctattgtatctcggaatagcg |
434 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
13212628 |
cctaagttattttctctcatctgcaactctgatctatgctcaacacctcacatcgaatcttccagaaccatcaattgatctattgtatcctggaatcgcg |
13212727 |
T |
|
| Q |
435 |
ctgtttcttgtaggcgtcaccggcaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggct |
534 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212728 |
ctgtttcttgtaggcgtcaccggaaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggct |
13212827 |
T |
|
| Q |
535 |
tgtttgattttgtgatatgtcctcattatcttttcgagatcatagggttttatggattttccttcatctctc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13212828 |
tgtttgattttgtgatatgtcctcattatcttttcgagatcatagggttttatggattttccttcatttctc |
13212899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 456 - 563
Target Start/End: Original strand, 13165929 - 13166036
Alignment:
| Q |
456 |
ggcaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtc |
555 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
13165929 |
ggcaacttctaccatcattttcttctatcaaaattgagaggaaaaggtgaaaaagaatacaagattcctaaaggtggcttatttgggattgtgatatgtc |
13166028 |
T |
|
| Q |
556 |
ctcattat |
563 |
Q |
| |
|
|||||||| |
|
|
| T |
13166029 |
ctcattat |
13166036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 465 - 563
Target Start/End: Original strand, 13188813 - 13188911
Alignment:
| Q |
465 |
taccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtcctcattat |
563 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
13188813 |
taccatcattttcttctatcaaaattgagaggaaaaggtgaaaaagaatacaagattcctaaaggtggcttatttgggattgtgatatgtcctcattat |
13188911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 456 - 560
Target Start/End: Original strand, 13188707 - 13188811
Alignment:
| Q |
456 |
ggcaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtc |
555 |
Q |
| |
|
||||| || |||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
13188707 |
ggcaatttataccatcattttcttctatcaaaattgagaggaaaaggtgaaaaagaatacaagattcctaaaggtggcttatttgggattgtgatatgtc |
13188806 |
T |
|
| Q |
556 |
ctcat |
560 |
Q |
| |
|
||||| |
|
|
| T |
13188807 |
ctcat |
13188811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 13188533 - 13188637
Alignment:
| Q |
282 |
tttgtccacaaatatagtggttctatggctcttgaaactgcaatccccataaccctaagttattttctctcatctgcaactatgatctatgctcaacacc |
381 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| ||||||| || || || || || || ||| | ||| ||| |||||||||||||| ||||||| |
|
|
| T |
13188533 |
tttgttcacaaatatagtggttctatgattcttgattctgcaattccaatcactctgagctactttatgtcaactgtaactatgatctatggccaacacc |
13188632 |
T |
|
| Q |
382 |
tcaca |
386 |
Q |
| |
|
||||| |
|
|
| T |
13188633 |
tcaca |
13188637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 13165755 - 13165859
Alignment:
| Q |
282 |
tttgtccacaaatatagtggttctatggctcttgaaactgcaatccccataaccctaagttattttctctcatctgcaactatgatctatgctcaacacc |
381 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| ||||||| || || || || ||||| || | ||| || |||||||||||||| ||||||| |
|
|
| T |
13165755 |
tttgttcacaaatatagtggttctatgattcttgattctgcaattccaatcactctgagttaccttatgtcaactataactatgatctatggccaacacc |
13165854 |
T |
|
| Q |
382 |
tcaca |
386 |
Q |
| |
|
||||| |
|
|
| T |
13165855 |
tcaca |
13165859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University