View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_low_32 (Length: 207)
Name: NF19306_low_32
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 7045396 - 7045551
Alignment:
| Q |
38 |
agatcacataattttggaggccacatatgcttcagggtatacaaccaattttaatttattttgaaaatgtcaattttgtgtgcgcttctttacatgtcta |
137 |
Q |
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| T |
7045396 |
agatcacataattttggagtccacatatgcttcagggtatacaaccaattttaatttattctgtaaatgtcaattttgtgtgtgcttctttacatgtcta |
7045495 |
T |
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| Q |
138 |
atattttctgacgtgaacttatcaaaaacggaaaaactctaacgtgagtagtgatg |
193 |
Q |
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| T |
7045496 |
atattttatgacgtgaacttatcaaaaacggaaaaactctaacgtgagtagagatg |
7045551 |
T |
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Target: chr2; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 35 - 193
Target Start/End: Original strand, 7031077 - 7031235
Alignment:
| Q |
35 |
cacagatcacataattttggaggccacatatgcttcagggtatacaaccaattttaatttattttgaaaatgtcaattttgtgtgcgcttctttacatgt |
134 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| || |
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| T |
7031077 |
cacagatcacataattttggagtccacatatgcttcagggtatacaaccaattttaatttattttgtaaatgtcaattttgtgtgtgcttctttacacgt |
7031176 |
T |
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| Q |
135 |
ctaatattttctgacgtgaacttatcaaaaacggaaaaactctaacgtgagtagtgatg |
193 |
Q |
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| T |
7031177 |
ctaatattttctgacgtgaacttataaaaaacagaaaaactctaacatgagtagagatg |
7031235 |
T |
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