View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19306_low_4 (Length: 589)

Name: NF19306_low_4
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19306_low_4
NF19306_low_4
[»] chr2 (33 HSPs)
chr2 (163-574)||(36796403-36796814)
chr2 (167-478)||(36788004-36788315)
chr2 (183-477)||(36760024-36760318)
chr2 (192-478)||(36775347-36775636)
chr2 (57-151)||(4975710-4975804)
chr2 (57-151)||(4993618-4993712)
chr2 (59-142)||(4976447-4976530)
chr2 (59-142)||(4994354-4994437)
chr2 (59-151)||(41519867-41519959)
chr2 (59-149)||(37545692-37545782)
chr2 (59-151)||(42370892-42370984)
chr2 (59-111)||(8536828-8536880)
chr2 (59-107)||(42369701-42369749)
chr2 (62-131)||(8536171-8536240)
chr2 (59-160)||(37546506-37546607)
chr2 (99-151)||(36390971-36391023)
chr2 (69-160)||(36718974-36719065)
chr2 (59-142)||(41768685-41768768)
chr2 (99-149)||(15602802-15602852)
chr2 (119-160)||(30545437-30545478)
chr2 (99-160)||(41984732-41984793)
chr2 (97-149)||(1271247-1271299)
chr2 (119-158)||(41985894-41985933)
chr2 (129-160)||(44154281-44154312)
chr2 (129-159)||(44154994-44155024)
chr2 (119-160)||(14573266-14573307)
chr2 (119-160)||(21471022-21471063)
chr2 (119-160)||(21471956-21471997)
chr2 (119-160)||(30544732-30544773)
chr2 (94-151)||(34617667-34617724)
chr2 (61-141)||(4386152-4386232)
chr2 (65-160)||(41042547-41042643)
chr2 (65-160)||(45139697-45139793)
[»] chr1 (25 HSPs)
chr1 (1-158)||(11469088-11469246)
chr1 (1-158)||(14925228-14925383)
chr1 (57-162)||(11469705-11469810)
chr1 (57-158)||(14924681-14924782)
chr1 (57-151)||(31787492-31787586)
chr1 (57-151)||(31788216-31788310)
chr1 (59-136)||(7463444-7463521)
chr1 (59-136)||(7464012-7464089)
chr1 (59-136)||(11426882-11426959)
chr1 (59-129)||(11427449-11427519)
chr1 (70-136)||(37889908-37889974)
chr1 (61-135)||(38618260-38618334)
chr1 (65-151)||(46134564-46134651)
chr1 (65-151)||(2687675-2687761)
chr1 (59-129)||(37890475-37890545)
chr1 (59-160)||(11032161-11032262)
chr1 (93-160)||(11031436-11031503)
chr1 (73-140)||(29334239-29334306)
chr1 (71-151)||(4641716-4641796)
chr1 (119-160)||(16270212-16270253)
chr1 (119-160)||(23440867-23440908)
chr1 (119-160)||(51974442-51974483)
chr1 (119-151)||(45922246-45922278)
chr1 (99-151)||(49420098-49420150)
chr1 (61-160)||(49611503-49611603)
[»] chr8 (20 HSPs)
chr8 (1-158)||(12350534-12350695)
chr8 (57-158)||(12349974-12350075)
chr8 (59-160)||(43924495-43924596)
chr8 (57-158)||(43924958-43925059)
chr8 (62-143)||(39257656-39257737)
chr8 (57-142)||(43971301-43971386)
chr8 (57-142)||(43972026-43972111)
chr8 (59-131)||(38686337-38686409)
chr8 (59-135)||(33801529-33801605)
chr8 (62-135)||(33802318-33802391)
chr8 (62-135)||(38687000-38687073)
chr8 (59-116)||(15183790-15183847)
chr8 (59-116)||(39258391-39258448)
chr8 (124-158)||(11676980-11677014)
chr8 (119-160)||(34992266-34992307)
chr8 (122-151)||(35943090-35943119)
chr8 (119-160)||(41859315-41859356)
chr8 (110-158)||(32574801-32574849)
chr8 (119-151)||(35840532-35840564)
chr8 (99-151)||(40450968-40451020)
[»] scaffold0189 (2 HSPs)
scaffold0189 (1-158)||(12745-12900)
scaffold0189 (57-158)||(12191-12292)
[»] chr4 (35 HSPs)
chr4 (1-158)||(6246791-6246949)
chr4 (57-158)||(6247410-6247512)
chr4 (57-158)||(10421521-10421622)
chr4 (1-119)||(10420963-10421079)
chr4 (57-158)||(15481510-15481611)
chr4 (59-158)||(15481042-15481141)
chr4 (59-135)||(50710359-50710435)
chr4 (59-148)||(45331395-45331484)
chr4 (62-135)||(53664242-53664315)
chr4 (59-111)||(50709713-50709765)
chr4 (62-160)||(30808626-30808724)
chr4 (59-160)||(30809447-30809548)
chr4 (59-111)||(53665028-53665080)
chr4 (96-151)||(232028-232083)
chr4 (61-151)||(6680286-6680376)
chr4 (69-111)||(13856645-13856687)
chr4 (119-160)||(47377600-47377641)
chr4 (59-151)||(45330579-45330671)
chr4 (119-162)||(1014008-1014051)
chr4 (94-160)||(25370511-25370577)
chr4 (119-160)||(47376857-47376898)
chr4 (63-151)||(34371476-34371564)
chr4 (61-116)||(34956333-34956388)
chr4 (119-162)||(36865719-36865762)
chr4 (61-116)||(50709041-50709096)
chr4 (119-160)||(11417692-11417733)
chr4 (119-160)||(11417939-11417980)
chr4 (86-158)||(11680283-11680356)
chr4 (86-158)||(11688562-11688635)
chr4 (119-160)||(26611285-26611326)
chr4 (119-160)||(29651334-29651375)
chr4 (119-151)||(25970120-25970152)
chr4 (119-151)||(47326791-47326823)
chr4 (119-151)||(47341587-47341619)
chr4 (119-151)||(55514356-55514388)
[»] chr3 (11 HSPs)
chr3 (57-158)||(38337417-38337518)
chr3 (59-160)||(38336949-38337048)
chr3 (61-140)||(44022031-44022110)
chr3 (72-131)||(15450259-15450318)
chr3 (62-151)||(55124428-55124517)
chr3 (119-160)||(19132814-19132855)
chr3 (125-158)||(42108377-42108410)
chr3 (99-151)||(33968195-33968247)
chr3 (59-159)||(49287693-49287793)
chr3 (119-160)||(36750439-36750480)
chr3 (99-151)||(27452637-27452689)
[»] chr6 (11 HSPs)
chr6 (57-162)||(27763416-27763521)
chr6 (119-160)||(24125977-24126018)
chr6 (119-160)||(24126720-24126761)
chr6 (119-160)||(3542819-3542860)
chr6 (119-160)||(3543065-3543106)
chr6 (119-160)||(7193343-7193384)
chr6 (119-160)||(22582481-22582522)
chr6 (119-160)||(22587312-22587353)
chr6 (119-160)||(33479701-33479742)
chr6 (119-160)||(33480630-33480671)
chr6 (99-151)||(25371183-25371235)
[»] chr5 (17 HSPs)
chr5 (58-151)||(4554671-4554764)
chr5 (1-160)||(4555275-4555432)
chr5 (86-151)||(26712357-26712422)
chr5 (86-151)||(26982095-26982160)
chr5 (59-151)||(6805899-6805991)
chr5 (61-151)||(4789534-4789624)
chr5 (59-142)||(6804775-6804858)
chr5 (72-159)||(17767546-17767633)
chr5 (119-160)||(9142052-9142093)
chr5 (73-160)||(8040400-8040487)
chr5 (65-160)||(39167388-39167483)
chr5 (119-160)||(2319271-2319312)
chr5 (119-160)||(8204125-8204166)
chr5 (119-160)||(15184019-15184060)
chr5 (119-160)||(33002818-33002859)
chr5 (119-160)||(39950409-39950450)
chr5 (119-151)||(42651581-42651613)
[»] chr7 (24 HSPs)
chr7 (59-151)||(46757438-46757530)
chr7 (59-160)||(27599216-27599317)
chr7 (57-160)||(46759202-46759305)
chr7 (59-160)||(27600037-27600138)
chr7 (62-151)||(12732261-12732350)
chr7 (59-151)||(35771201-35771293)
chr7 (119-158)||(44909361-44909400)
chr7 (103-158)||(45887286-45887341)
chr7 (123-158)||(46756277-46756312)
chr7 (119-162)||(47331955-47331998)
chr7 (119-160)||(668184-668225)
chr7 (122-151)||(6730162-6730191)
chr7 (119-160)||(7677811-7677852)
chr7 (119-160)||(17145627-17145668)
chr7 (119-160)||(37468915-37468956)
chr7 (119-160)||(37469007-37469048)
chr7 (119-160)||(38778859-38778900)
chr7 (119-160)||(38779565-38779606)
chr7 (119-160)||(41194518-41194559)
chr7 (119-160)||(45887982-45888023)
chr7 (103-160)||(48259804-48259861)
chr7 (123-151)||(9122664-9122692)
chr7 (119-151)||(24995866-24995898)
chr7 (119-151)||(24996685-24996717)
[»] scaffold0071 (1 HSPs)
scaffold0071 (72-131)||(11873-11932)
[»] scaffold0119 (2 HSPs)
scaffold0119 (97-149)||(29938-29990)
scaffold0119 (97-141)||(36620-36664)
[»] scaffold2003 (1 HSPs)
scaffold2003 (72-151)||(486-565)
[»] scaffold0311 (1 HSPs)
scaffold0311 (119-160)||(162-203)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 163 - 574
Target Start/End: Original strand, 36796403 - 36796814
Alignment:
Q  163 ttctcaaaattcacacttaaaagtgactagtgaactggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcct 262  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36796403 ttctcaaaattcacacttaaaagtgactagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcct 36796502  T
Q  263 ccttatattcacccacttgtgaaaaattcaaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttggctctgaaaccagttcagatg 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  36796503 ccttatattcacccacttgtgaaaaattcaaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttggctctcaaagcagttcagatg 36796602  T
Q  363 gattctcttcttacacatcatttaaagataacaactccaattatgatgaaaaattgaaagaaatagtgagcatggtgaagaaaccacgttcttatcctcc 462  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36796603 gattctcttcttacacatcatttgaagataacaactccaattatgatgaaaaattgaaagaaatagtgagcatggtgaagaaaccacgttcttatcctcc 36796702  T
Q  463 ttcacttccttcactcacaagtcaaagtgaacatggtcagaatcaaccaccgtgacaatggaaggtttttgttcctacaagttgtgcaggttccttcaca 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36796703 ttcacttccttcactcacaagtcaaagtgaacatggtcagaatcaaccaccgtgacaatggaaggtttttgttcctacaagttgtgcaggttccttcaca 36796802  T
Q  563 caactacttctt 574  Q
    ||||||||||||    
T  36796803 caactacttctt 36796814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 167 - 478
Target Start/End: Original strand, 36788004 - 36788315
Alignment:
Q  167 caaaattcacacttaaaagtgactagtgaactggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcctcctt 266  Q
    ||||| ||||||| |||| | || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36788004 caaaactcacactcaaaaatcacaagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctcctt 36788103  T
Q  267 atattcacccacttgtgaaaaattcaaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttggctctgaaaccagttcagatggatt 366  Q
    ||||||| |||||||||||||||||||| || ||| ||||||  ||||||||  |||| ||||||||||| ||||| || |||||  | |||||||| ||    
T  36788104 atattcatccacttgtgaaaaattcaaacaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaactggctcagatggttt 36788203  T
Q  367 ctcttcttacacatcatttaaagataacaactccaattatgatgaaaaattgaaagaaatagtgagcatggtgaagaaaccacgttcttatcctccttca 466  Q
    ||||||||||||||||| | | |||||||| || ||  | |||||||| ||||||||||  | |  |||||||||||||||||||| |||||||||| ||    
T  36788204 ctcttcttacacatcatatgaggataacaattcaaacgaagatgaaaacttgaaagaaaaggcggacatggtgaagaaaccacgttgttatcctcctcca 36788303  T
Q  467 cttccttcactc 478  Q
    ||||||||||||    
T  36788304 cttccttcactc 36788315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 183 - 477
Target Start/End: Original strand, 36760024 - 36760318
Alignment:
Q  183 aagtgactagtgaactggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcctccttatattcacccacttgt 282  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  36760024 aagtcactagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgt 36760123  T
Q  283 gaaaaattcaaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttggctctgaaaccagttcagatggattctcttcttacacatca 382  Q
    |||||||||||| || ||| ||||||  ||||||||  |||| ||||||||||| ||||| || |||||  | |||||||| ||||||||||||||||||    
T  36760124 gaaaaattcaaacaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaactggctcagatggtttctcttcttacacatca 36760223  T
Q  383 tttaaagataacaactccaattatgatgaaaaattgaaagaaatagtgagcatggtgaagaaaccacgttcttatcctccttcacttccttcact 477  Q
    | | |||||||||| || ||| |||||||||| ||||||||||  |||  ||||||||||||    |||| || ||||||| |||||||||||||    
T  36760224 tctgaagataacaattcaaatgatgatgaaaacttgaaagaaaaggtggacatggtgaagaagattcgttgttttcctcctccacttccttcact 36760318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 192 - 478
Target Start/End: Original strand, 36775347 - 36775636
Alignment:
Q  192 gtgaactggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcctccttatattcacccacttgtgaaaaattc 291  Q
    ||||| |||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36775347 gtgaattggatatatggagttcaatcttgacccaaaaaaagaaagatgaagcttcacaatcaaaaactcctccttatattcacccacttgtgaaaaattc 36775446  T
Q  292 aaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttggctctgaaaccagttcagatggattc---tcttcttacacatcatttaaa 388  Q
    | |||| ||||||||||||||||||||  |||| ||||| |||| |||||| || ||||   | |||||||| |||   |||||||||||||||||| ||    
T  36775447 acaaaattatttaagtgaaaagagtcttgaaatgtgcactgagattcttggatcagaaaatggatcagatgggttcttttcttcttacacatcatttgaa 36775546  T
Q  389 gataacaactccaattatgatgaaaaattgaaagaaatagtgagcatggtgaagaaaccacgttcttatcctccttcacttccttcactc 478  Q
    ||||| || |||||  ||| |||||||||||||||||  |||| |||||||||||||||||||| || ||||||| ||||||||| ||||    
T  36775547 gataataattccaaggatggtgaaaaattgaaagaaaaggtgaacatggtgaagaaaccacgttgttttcctcctccacttcctttactc 36775636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 4975804 - 4975710
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  4975804 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtgggaaacaacttcccattccca 4975710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 4993712 - 4993618
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||||| ||||||    
T  4993712 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtggaaaacaacttcccattccca 4993618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 4976447 - 4976530
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttc 142  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||||||||||||||    
T  4976447 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 4976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 4994354 - 4994437
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttc 142  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||||||||||||||    
T  4994354 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 4994437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 41519867 - 41519959
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||  |  ||||||||||||||||| |||||||||||||||    
T  41519867 tggtgttgggtgtctatggtaaaagtatgttctctactttatttaacggtcaaaaaaaactttcccatggtgggaaaaaacttccctttccca 41519959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 37545782 - 37545692
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcc 149  Q
    |||||||||||||||||||||| | | |||||  ||||| |||||||||||||| |||  |||||||||||||||||||||||||||||||    
T  37545782 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaacttccctttcc 37545692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 42370892 - 42370984
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||| ||||||||||||||||| ||| ||||| |||||||||||||| ||| |||   ||||||||||||||||||||||| || ||||||    
T  42370892 tggtgtcgagtgtctatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaacaactttccattccca 42370984  T

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Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 8536828 - 8536880
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaa 111  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  8536828 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaa 8536880  T

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Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 42369749 - 42369701
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatgg 107  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42369749 tggtgttgagtgtctatgataaaattatgttctctactttatctaatgg 42369701  T

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Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 8536240 - 8536171
Alignment:
Q  62 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgg 131  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||||| |||   |||||||||||||    
T  8536240 tgttgagtgtctatgataaaatcatgttctctactttatctaatcgtcaatatttactttcccatggtgg 8536171  T

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Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 37546506 - 37546607
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||||| ||||| ||||| | | |||||  ||||| ||||| |||||||| |||  ||||||||| |||||||||||| ||||||||||  |||||    
T  37546506 tggtgttgagagtctacgataagaatgtgttcgttacttaatctagtggtcaaatttaactttcccatgatgggaaacaactcccctttcccattttaaa 37546605  T
Q  159 tg 160  Q
    ||    
T  37546606 tg 37546607  T

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Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 36391023 - 36390971
Alignment:
Q  99 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||| ||||||   |||||||||||||||||||||||||||||||||    
T  36391023 atctaatggttaaaatttactttcccatggtgggaaacaacttccctttccca 36390971  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 36718974 - 36719065
Alignment:
Q  69 tgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    |||||||||||||||||||||   || || || ||||||| |||||||| ||||| ||||| |||||||| || ||||||||| | ||||||    
T  36718974 tgtctatgataaaagtatgtttcttatttaatttaatggttaaaattagctttcctatggtaggaaacaagtttcctttcccatactaaatg 36719065  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 41768685 - 41768768
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttc 142  Q
    |||||||||| | |||||||||   | |||||| ||| | |||||||||||||||||   ||||||||||||||||||||||||    
T  41768685 tggtgttgagagactatgataactatgtgttctttacctaatctaatggtcaaaattgactttcccatggtgggaaacaacttc 41768768  T

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Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 15602802 - 15602852
Alignment:
Q  99 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcc 149  Q
    |||||||||||||||    ||||||||||||||||||||||||||||||||    
T  15602802 atctaatggtcaaaaaatattttcccatggtgggaaacaacttccctttcc 15602852  T

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Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 30545437 - 30545478
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  30545437 tttcccatcatgggaaacaacttccctttcccaaattaaatg 30545478  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 41984793 - 41984732
Alignment:
Q  99 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    |||||||||||| || ||| |||||||||||| |||| ||||  ||||||||||||||||||    
T  41984793 atctaatggtcagaaatagctttcccatggtgagaaaaaactagcctttcccaaattaaatg 41984732  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 1271299 - 1271247
Alignment:
Q  97 ttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcc 149  Q
    |||||||| ||| ||||||||||||||||| |||| ||||||||| |||||||    
T  1271299 ttatctaacggttaaaattagttttcccatagtggaaaacaactttcctttcc 1271247  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 41985894 - 41985933
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  41985894 tttctcatggtggaaaacaacttccctttcccaaattaaa 41985933  T

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Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 160
Target Start/End: Complemental strand, 44154312 - 44154281
Alignment:
Q  129 tgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||||||||||||||||||    
T  44154312 tgggaaacaacttccctttcccaaattaaatg 44154281  T

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Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 159
Target Start/End: Original strand, 44154994 - 44155024
Alignment:
Q  129 tgggaaacaacttccctttcccaaattaaat 159  Q
    |||||||||||||||||||||||||||||||    
T  44154994 tgggaaacaacttccctttcccaaattaaat 44155024  T

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Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 14573307 - 14573266
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  14573307 tttcccatggtgggaaaaaactctcctttcccaaattaaatg 14573266  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 21471063 - 21471022
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  21471063 tttcccatggtgggaaagaactctcctttcccaaattaaatg 21471022  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 21471956 - 21471997
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  21471956 tttcccatggtgggaaagaactctcctttcccaaattaaatg 21471997  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 30544773 - 30544732
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||  ||||||||||||||| ||||||||||||||||    
T  30544773 tttcccatcatgggaaacaacttccatttcccaaattaaatg 30544732  T

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Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 34617724 - 34617667
Alignment:
Q  94 actttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||| ||||||||||||||| ||  |||||||||||||||||||| |  |||||||||    
T  34617724 acttaatctaatggtcaaaaataactttcccatggtgggaaacaattatcctttccca 34617667  T

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Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 4386152 - 4386232
Alignment:
Q  61 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaactt 141  Q
    |||||||| || |||||||| | |||| ||| || || ||||||  ||  ||||||| |||||||||||||||||||||||    
T  4386152 gtgttgagagtgtatgataagactatgctctatatttaatctaaccgtttaaattagctttcccatggtgggaaacaactt 4386232  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 41042643 - 41042547
Alignment:
Q  65 tgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta-gttttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    |||||||||||||||| | |||| ||| || || |||||||||||||||  |  |||||||||||||||||| ||    |||||| |||||||||||    
T  41042643 tgagtgtctatgataacattatggtctatatttgatctaatggtcaaaaaaatattttcccatggtgggaaagaagcctcctttctcaaattaaatg 41042547  T

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Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 45139793 - 45139697
Alignment:
Q  65 tgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta-gttttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    |||||||||||||||| | |||| ||| || || |||||||||||||||  |  |||||||||| ||| ||| || |  ||||||||||||||||||    
T  45139793 tgagtgtctatgataacattatggtctatatttgatctaatggtcaaaaaaatattttcccatgatggaaaagaagtctcctttcccaaattaaatg 45139697  T

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Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 11469246 - 11469088
Alignment:
Q  1 agaaagaaaagagagttgagacagctgcaagtggtgggtcaatatggnnnnnnnnn-tctggtgttgagtgtctatgataaaagtatgttctctacttta 99  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||           ||||||||||||||||||||||||||||||||||||||| |||    
T  11469246 agaaagaaaagagagttgggacagctgcaagtggtgggccaatatgaaaaaaaaaaatctggtgttgagtgtctatgataaaagtatgttctctacctta 11469147  T
Q  100 tctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  11469146 tctaatggtcaaaattagctttcccatggtgggaaacaacttccctttcctaaattaaa 11469088  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 14925228 - 14925383
Alignment:
Q  1 agaaagaaaagagagttgagacagctgcaagtggtgggtcaatatggnnnnnnnnntctggtgttgagtgtctatgataaaagtatgttctctactttat 100  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||||||||||| |||||    
T  14925228 agaaagaaaagagagttggggcagctgcaagtggtgggccaatatggaaaaaaa--tctggtgttgagtgtctatgataaaagtatgttctctagtttat 14925325  T
Q  101 ctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||    
T  14925326 ctaatggtcaaaattagctttcccatggtgggaaacaactttccttccccaaattaaa 14925383  T

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Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 11469705 - 11469810
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 156  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  11469705 tctggtgttgaatgtctatgataaaagtatgttctctactttatctaatggtcaaaattagtttttccatggtgaaaaacaacttccctttcccaaatta 11469804  T
Q  157 aatgtc 162  Q
    ||||||    
T  11469805 aatgtc 11469810  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 14924782 - 14924681
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 156  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14924782 tctggtgttgagtgtctatgataaaaatatgttctctatttaatttaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaatta 14924683  T
Q  157 aa 158  Q
    ||    
T  14924682 aa 14924681  T

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Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 31787586 - 31787492
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  31787586 tctgatgttgagtctctatgataaaagtatgttctctactttatctaatggtcaaaattagcttttccatggtgggaaacaacttcccattccca 31787492  T

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Target: chr1; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 31788216 - 31788310
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||||||||| | ||||||    
T  31788216 tctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaacttctcattccca 31788310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 7463521 - 7463444
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaac 136  Q
    |||||||||  ||||||||||||| | |||||| || || ||||||||||||||||||| ||||||||||||||||||    
T  7463521 tggtgttgatggtctatgataaaactgtgttctttatttaatctaatggtcaaaattagctttcccatggtgggaaac 7463444  T

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Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 7464012 - 7464089
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaac 136  Q
    |||||||||  ||||||||||||  | ||||||||| || |||| |||||||||||||||||||||||||||||||||    
T  7464012 tggtgttgatggtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggtgggaaac 7464089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 11426959 - 11426882
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaac 136  Q
    |||||||||  ||||||||||||| | |||||| || || ||||||||||||||||||| ||||||||||||||||||    
T  11426959 tggtgttgatggtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaac 11426882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 11427449 - 11427519
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggt 129  Q
    |||||||||  ||||||||||||  | ||||||||| || |||| ||||||||||||||||||||||||||    
T  11427449 tggtgttgatggtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggt 11427519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 37889974 - 37889908
Alignment:
Q  70 gtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaac 136  Q
    ||||||||||||| | |||||| || || ||||||||||||||||| | ||||||||||||||||||    
T  37889974 gtctatgataaaactgtgttctttagttaatctaatggtcaaaattcgctttcccatggtgggaaac 37889908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 38618334 - 38618260
Alignment:
Q  61 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaa 135  Q
    |||||||| ||||||||||| | | ||||| |||||| |||||||||||||| |||  |||||||||||||||||    
T  38618334 gtgttgagagtctatgataagaatgtgttcactacttaatctaatggtcaaacttaactttcccatggtgggaaa 38618260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 46134564 - 46134651
Alignment:
Q  65 tgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta-gttttcccatggtgggaaacaacttccctttccca 151  Q
    ||||||||| |||||| |  ||| ||| || || |||||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  46134564 tgagtgtctttgataacatcatggtctatatttgatctaatggtaaaaagtaagttttcccatgatgggaaacaacttccctttccca 46134651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 2687675 - 2687761
Alignment:
Q  65 tgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||| ||||||||||||| |||||||  || || ||||||  ||||||| || ||||||||||||||||||||| |  |||||||||    
T  2687675 tgagagtctatgataaaactatgttccttagttaatctaactgtcaaaaataattttcccatggtgggaaacaattatcctttccca 2687761  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 37890475 - 37890545
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggt 129  Q
    |||||||||  ||||||||||||  | ||||||||  || |||| ||||||||||||||||||||||||||    
T  37890475 tggtgttgatggtctatgataaagttgtgttctcttgttaatctgatggtcaaaattagttttcccatggt 37890545  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 11032161 - 11032262
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||||| ||| ||||||| | | |||||  ||||| |||||||||||||| | |  |||||||||||||||||| | | ||||||||||  |||||    
T  11032161 tggtgttgagagtccatgataagaatgtgttcattacttaatctaatggtcaaattcaactttcccatggtgggaaactattcccctttcccatgttaaa 11032260  T
Q  159 tg 160  Q
    ||    
T  11032261 tg 11032262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 11031503 - 11031436
Alignment:
Q  93 tactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||| |||||||||||||| |||  |||||||||||||||||| | | ||||||||||  |||||||    
T  11031503 tacttaatctaatggtcaaatttaactttcccatggtgggaaactattcccctttcccatgttaaatg 11031436  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 29334306 - 29334239
Alignment:
Q  73 tatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaact 140  Q
    ||||||||||||||| ||| || || |||||||||  ||||||   ||||||||||||||||||||||    
T  29334306 tatgataaaagtatggtctttatttgatctaatgggtaaaatttactttcccatggtgggaaacaact 29334239  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 4641716 - 4641796
Alignment:
Q  71 tctatgataaaagtatgttctctactttatctaatgg-tcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||||| ||||||||||| || ||| ||||| | |||||||  |||||| ||||||||||||| | ||||||||||    
T  4641716 tctatgataaaactatgttctctatttgatccaatggttgaaaatta-ctttcccttggtgggaaacaattcccctttccca 4641796  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 16270253 - 16270212
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  16270253 tttcccatggtgggaaagaactctcctttcccaaattaaatg 16270212  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 23440867 - 23440908
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  23440867 tttcccatggtgggaaagaactctcctttcccaaattaaatg 23440908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 51974483 - 51974442
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  51974483 tttcccatggtgggaaagaactctcctttcccaaattaaatg 51974442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 45922278 - 45922246
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttccca 151  Q
    ||||||||||||||||||||| |||||||||||    
T  45922278 tttcccatggtgggaaacaacctccctttccca 45922246  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 49420150 - 49420098
Alignment:
Q  99 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||||||||  || ||||||||  ||||||||||||| |||||||||    
T  49420150 atctaatggtcaaaaaaagctttcccatcatgggaaacaactttcctttccca 49420098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 49611503 - 49611603
Alignment:
Q  61 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaat-tagttttcccatggtgggaaacaacttccctttcccaaattaaat 159  Q
    |||||||| | | ||| ||||| | ||||| ||| || ||||||||| |||||  || |||||||||| ||||||| ||||  |||||||||||||||||    
T  49611503 gtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaattttcccatgatgggaaaaaactagcctttcccaaattaaat 49611602  T
Q  160 g 160  Q
    |    
T  49611603 g 49611603  T

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Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 12350534 - 12350695
Alignment:
Q  1 agaaagaaaagagagttgagacagctgcaagtggtgggtcaatatggnnnnnnnnn----tctggtgttgagtgtctatgataaaagtatgttctctact 96  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||             |||||||||||||||||||||||||||||||||||||||     
T  12350534 agaaagaaaagagagttgggacagctacaagtggtgggccaatatggataaaaaaaaaaatctggtgttgagtgtctatgataaaagtatgttctctacc 12350633  T
Q  97 ttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  12350634 ttatctaatggtcaaaattaggtttcccatggtgggaaacaatttccctttcccaaattaaa 12350695  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 12350075 - 12349974
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 156  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  12350075 tctggtgttgagtgtctatgataaaagcatgttctttactttatctaatggttaaaattagtttttccatggtgggaaacaacttccctttcccaaatta 12349976  T
Q  157 aa 158  Q
    ||    
T  12349975 aa 12349974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 43924596 - 43924495
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    ||||||||||||| |||||||||| ||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43924596 tggtgttgagtgtttatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaa 43924497  T
Q  159 tg 160  Q
    ||    
T  43924496 tg 43924495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 43924958 - 43925059
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 156  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  43924958 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaaacaacttccctttcccaaatta 43925057  T
Q  157 aa 158  Q
    ||    
T  43925058 aa 43925059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 39257737 - 39257656
Alignment:
Q  62 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttcc 143  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  39257737 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttcc 39257656  T

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Target: chr8; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 43971386 - 43971301
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttc 142  Q
    |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  43971386 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttc 43971301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 43972026 - 43972111
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttc 142  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||||||||||||||    
T  43972026 tctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 43972111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 38686409 - 38686337
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgg 131  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||   |||||||||||||    
T  38686409 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaatatttactttcccatggtgg 38686337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 33801605 - 33801529
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaa 135  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||| |||   ||| |||||||||||||    
T  33801605 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaatatttacttttccatggtgggaaa 33801529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 33802318 - 33802391
Alignment:
Q  62 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaa 135  Q
    |||||||||||||||||||||  |||||||||| ||||| |||||||||| |||   |||||||||||||||||    
T  33802318 tgttgagtgtctatgataaaaccatgttctctattttatttaatggtcaatatttactttcccatggtgggaaa 33802391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 38687000 - 38687073
Alignment:
Q  62 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaa 135  Q
    |||||||||||||||||||||  |||||||||||||||||||||| |||| |||   |||||||| ||||||||    
T  38687000 tgttgagtgtctatgataaaatcatgttctctactttatctaatgatcaatatttactttcccattgtgggaaa 38687073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 15183790 - 15183847
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta 116  Q
    |||| |||||||||| ||||||||  ||||| ||||||||||||||||||||||||||    
T  15183790 tggttttgagtgtctgtgataaaatcatgttttctactttatctaatggtcaaaatta 15183847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 39258391 - 39258448
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta 116  Q
    |||||||||||||||| | |||||||||||||| || ||||||||||||| |||||||    
T  39258391 tggtgttgagtgtctacggtaaaagtatgttctttagtttatctaatggttaaaatta 39258448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 11677014 - 11676980
Alignment:
Q  124 catggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||||||| ||||||||||||||||||||||    
T  11677014 catggtgggaaagaacttccctttcccaaattaaa 11676980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 34992266 - 34992307
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  34992266 tttcccatggtgggaaaaaactctcctttcccaaattaaatg 34992307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 151
Target Start/End: Complemental strand, 35943119 - 35943090
Alignment:
Q  122 cccatggtgggaaacaacttccctttccca 151  Q
    ||||||||||||||||||||||||||||||    
T  35943119 cccatggtgggaaacaacttccctttccca 35943090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 41859356 - 41859315
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  41859356 tttcccatggtgggaaagaactctcctttcccaaattaaatg 41859315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 32574801 - 32574849
Alignment:
Q  110 aaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||| ||| |||||||||||||||||||| | |||||| ||||||    
T  32574801 aaaattagctttaccatggtgggaaacaacttctcattcccatattaaa 32574849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 35840532 - 35840564
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||| ||||||||||||||||||||||||    
T  35840532 tttcccatcgtgggaaacaacttccctttccca 35840564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 40450968 - 40451020
Alignment:
Q  99 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||| ||||||   ||||||||||||||||||||||| | |||||||    
T  40450968 atctaatggttaaaatttactttcccatggtgggaaacaacttacatttccca 40451020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 12745 - 12900
Alignment:
Q  1 agaaagaaaagagagttgagacagctgcaagtggtgggtcaatatggnnnnnnnnntctggtgttgagtgtctatgataaaagtatgttctctactttat 100  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||         |  ||||||||||||||||||||||||||||||||||| |||||    
T  12745 agaaagaaaagagagttggggcagctgcaagtggtgggccaatatggaaaaaaaaat--ggtgttgagtgtctatgataaaagtatgttctctagtttat 12842  T
Q  101 ctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||| |||||||||||    
T  12843 ctaatggtcaaaattaactttcccatggtgggaaacaacttcacttccccaaattaaa 12900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 12292 - 12191
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 156  Q
    |||| ||||||||||||||||||||| ||||||||||| || |||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||    
T  12292 tctgatgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaattttctcatggtgggaaacaacttctctttcccaaatta 12193  T
Q  157 aa 158  Q
    ||    
T  12192 aa 12191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 6246949 - 6246791
Alignment:
Q  1 agaaagaaaagagagttgagacagctgcaagtggtgggtcaatatggnnnnnnnnntc-tggtgttgagtgtctatgataaaagtatgttctctacttta 99  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||            || |||||||||||||||||||||||||||||||||| |||    
T  6246949 agaaagaaaagagagttgggacagctgcaagtggtgggccaatatggaaaaaaaaaaaatgatgttgagtgtctatgataaaagtatgttctctacctta 6246850  T
Q  100 tctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  6246849 tctaatggtcaaaattaactttcccatggtgggaaacaatttccctttcccaaattaaa 6246791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 6247410 - 6247512
Alignment:
Q  57 tctggtgttgagtgtctatgataaaa-gtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatt 155  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||    
T  6247410 tctggtgttgagtgtctatgataaaaagtatgttctctactttatctaatgatcaaaattagttttcccatgatgagaaacaacttccctttcccaaatt 6247509  T
Q  156 aaa 158  Q
    |||    
T  6247510 aaa 6247512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 10421521 - 10421622
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 156  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  10421521 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtggaaaacaacttccctttcccaaatta 10421620  T
Q  157 aa 158  Q
    ||    
T  10421621 aa 10421622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 10421079 - 10420963
Alignment:
Q  1 agaaagaaaagagagttgagacagctgcaagtggtgggtcaatatggnnnnnnnnntctggtgttgagtgtctatgataaaagtatgttctctactttat 100  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| |||| |||||    
T  10421079 agaaagaaaagagagttggggcagctgcaagtggtgggtcaatatggaaaaaaa--tctggtgttgagtgtctatgataaaagtatgttatctagtttat 10420982  T
Q  101 ctaatggtcaaaattagtt 119  Q
    |||||||||||||||||||    
T  10420981 ctaatggtcaaaattagtt 10420963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 15481510 - 15481611
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 156  Q
    ||||||||||||| |||||||||||| ||||||||||| || |||||  ||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  15481510 tctggtgttgagtttctatgataaaaatatgttctctatttaatctaccggtcaaaattagttttcccattgtgggaaacaacttccctttcgcaaatta 15481609  T
Q  157 aa 158  Q
    ||    
T  15481610 aa 15481611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 15481141 - 15481042
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||||| ||||||||||||| ||||||||||| || |||||| |||||||||||| |||||||||  ||||||||||||||||| |||||||||||    
T  15481141 tggtgttgagagtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgacgggaaacaacttcccttccccaaattaaa 15481042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 50710359 - 50710435
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaa 135  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||| |||   |||||||||||||||||    
T  50710359 tggtgttgagtgtctatgataaattcatgttctctactttatctaatggtcaatatttactttcccatggtgggaaa 50710435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 45331395 - 45331484
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttc 148  Q
    |||||||||||||||||||||| | | |||||  ||||| |||||||||||||| |||  |||| ||||||||||||||||| |||||||    
T  45331395 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttctcatggtgggaaacaactcccctttc 45331484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 53664315 - 53664242
Alignment:
Q  62 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaa 135  Q
    |||||||||||||||||||||  |||||||||| |||||||||||||||| |||   |||||||||||||||||    
T  53664315 tgttgagtgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatggtgggaaa 53664242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 50709765 - 50709713
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaa 111  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  50709765 tggtgttgagtgtctatgataaaactatgttctctactttatctaatagtcaa 50709713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 30808724 - 30808626
Alignment:
Q  62 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||||| | | | |||  ||||| |||||||||||||| |||  ||||||||||||||||||||||  |||||||||  |||||||    
T  30808724 tgttgagtgtctatgataagaatgtattcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactctcctttcccattttaaatg 30808626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 30809447 - 30809548
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||||| ||||||||||||| | |||||  ||||| ||||| |||||||| |||  |||| |||||||| |||||||| ||||||||||  |||||    
T  30809447 tggtgttgagagtctatgataaaaatgtgttcattacttaatctagtggtcaaatttaactttctcatggtggaaaacaactcccctttcccattttaaa 30809546  T
Q  159 tg 160  Q
    ||    
T  30809547 tg 30809548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 53665028 - 53665080
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaa 111  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  53665028 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaa 53665080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 232028 - 232083
Alignment:
Q  96 tttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    ||||||||||||| ||||||   |||||||||||||||||||||||||||||||||    
T  232028 tttatctaatggttaaaatttactttcccatggtgggaaacaacttccctttccca 232083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 6680286 - 6680376
Alignment:
Q  61 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    ||||||||  |||||||||||| |||||||| ||||| ||||||||||||| |||   |||||||||||| |||||   ||||||||||||    
T  6680286 gtgttgagaatctatgataaaactatgttctttacttaatctaatggtcaatatttactttcccatggtgagaaactctttccctttccca 6680376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 13856687 - 13856645
Alignment:
Q  69 tgtctatgataaaagtatgttctctactttatctaatggtcaa 111  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  13856687 tgtctatgataaaggtatgttctctactttatctaatggtcaa 13856645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 47377600 - 47377641
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  47377600 tttcccatggtgggaaacaactcccctttcccaaattaaatg 47377641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 45330671 - 45330579
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||| ||||||||||| | | | |||  ||||| ||||| |||||||| |||  ||| |||||||||||||||||| ||||||||||    
T  45330671 tggtgttgagagtctatgataagaatgtattcattacttaatctagtggtcaaatttaacttttccatggtgggaaacaactcccctttccca 45330579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 1014008 - 1014051
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatgtc 162  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  1014008 tttcccatggtgggaaacaacttcacttacccaaattaaatgtc 1014051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 25370577 - 25370511
Alignment:
Q  94 actttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    |||| |||||||||||| ||  || ||||||||||||||||| ||||  ||||||||||||||||||    
T  25370577 acttgatctaatggtcagaaaaagctttcccatggtgggaaaaaactagcctttcccaaattaaatg 25370511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 47376898 - 47376857
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  47376898 tttcccatgatgggaaacaactcccctttcccaaattaaatg 47376857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 34371564 - 34371476
Alignment:
Q  63 gttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||| ||||||||| ||||||   ||||  ||||||||| |||||  |  |||||||||||||||||||| | ||||||||||    
T  34371564 gttgagtgtccatgataaaattatgtttcttactcaatctaatggacaaaaaaaactttcccatggtgggaaacaattcccctttccca 34371476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 34956388 - 34956333
Alignment:
Q  61 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta 116  Q
    |||||||| ||||||||||||| | |||||| ||||| |||||| |||||||||||    
T  34956388 gtgttgagagtctatgataaaaatgtgttctttacttgatctaagggtcaaaatta 34956333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 36865719 - 36865762
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatgtc 162  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||    
T  36865719 tttcccatggtgggaaagaactctcctttcccaaattaaatgtc 36865762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 50709096 - 50709041
Alignment:
Q  61 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaatta 116  Q
    |||||||| ||||||||||||| | |||||| ||||| |||||| |||||||||||    
T  50709096 gtgttgagagtctatgataaaaatgtgttctttacttgatctaagggtcaaaatta 50709041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 11417733 - 11417692
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  11417733 tttcccatggtgggaaagaactctcctttcccaaattaaatg 11417692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 11417939 - 11417980
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  11417939 tttcccatggtgggaaagaactctcctttcccaaattaaatg 11417980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 11680356 - 11680283
Alignment:
Q  86 tgttctctactttatctaatggtcaaaat-tagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    ||||| ||| || |||||||||||||||  ||  ||||||||||||||||| ||||  ||||||||||||||||    
T  11680356 tgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaactaacctttcccaaattaaa 11680283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 11688635 - 11688562
Alignment:
Q  86 tgttctctactttatctaatggtcaaaat-tagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    ||||| ||| || |||||||||||||||  ||  ||||||||||||||||| ||||  ||||||||||||||||    
T  11688635 tgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaactaacctttcccaaattaaa 11688562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 26611285 - 26611326
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  26611285 tttcccatggtgggaaaaaactctcctttcccaaattaaatg 26611326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 29651334 - 29651375
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  29651334 tttcccatggtgggaaagaactctcctttcccaaattaaatg 29651375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 25970152 - 25970120
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||||||||||||||| ||||||||||    
T  25970152 tttcccatggtgggaaacaactcccctttccca 25970120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 47326791 - 47326823
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttccca 151  Q
    ||||||||||||||||||||||| |||||||||    
T  47326791 tttcccatggtgggaaacaactttcctttccca 47326823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 47341587 - 47341619
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttccca 151  Q
    ||||||||||||||||||||||| |||||||||    
T  47341587 tttcccatggtgggaaacaactttcctttccca 47341619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 55514356 - 55514388
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttccca 151  Q
    ||||||||||||||||||||||| |||||||||    
T  55514356 tttcccatggtgggaaacaactttcctttccca 55514388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 38337417 - 38337518
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 156  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38337417 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaatta 38337516  T
Q  157 aa 158  Q
    ||    
T  38337517 aa 38337518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 38337048 - 38336949
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||||||||||  ||||||| ||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  38337048 tggtgttgagtgtct--gataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttcccttccccaaattaaa 38336951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 44022031 - 44022110
Alignment:
Q  61 gtgttgagtgtctatgataaaagtatgttctctacttt-atctaatggtcaaaattagttttcccatggtgggaaacaact 140  Q
    ||||||||||| |||||||||||||||||| ||| ||| |||||||||||||| ||  |||||||||||||| ||||||||    
T  44022031 gtgttgagtgtgtatgataaaagtatgttc-ctagtttaatctaatggtcaaatttttttttcccatggtggaaaacaact 44022110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 15450318 - 15450259
Alignment:
Q  72 ctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgg 131  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||  |||||||||||||    
T  15450318 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtgg 15450259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 55124517 - 55124428
Alignment:
Q  62 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||  |||||||||||| |||||||| ||| | ||||||| ||||| |||  |||||||||||||||||||   ||||||||||||    
T  55124517 tgttgagaatctatgataaaactatgttctttacatgatctaatagtcaatatttattttcccatggtgggaaactctttccctttccca 55124428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 19132814 - 19132855
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  19132814 tttcccatggtgggaaagaactttcctttcccaaattaaatg 19132855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 42108410 - 42108377
Alignment:
Q  125 atggtgggaaacaacttccctttcccaaattaaa 158  Q
    ||||||||||||||||||||||||||||||||||    
T  42108410 atggtgggaaacaacttccctttcccaaattaaa 42108377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 33968247 - 33968195
Alignment:
Q  99 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||||||||    ||||||||||||||||||||| ||||||||||||    
T  33968247 atctaatggtcaaaaaatattttcccatggtgggaaacaagttccctttccca 33968195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 49287793 - 49287693
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||||| || |||||||| | |||||||| ||||| ||||||  ||  |||||| ||||||||| || |||||||||||  |||||| | ||||||    
T  49287793 tggtgttgagagtgtatgataagactatgttctatacttaatctaaccgtttaaattaattttcccatagtaggaaacaactttactttcctatattaaa 49287694  T
Q  159 t 159  Q
    |    
T  49287693 t 49287693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 36750439 - 36750480
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  36750439 tttcccatggtgggaaagaactctcctttcccaaattaaatg 36750480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 27452689 - 27452637
Alignment:
Q  99 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||||||| ||| |||| ||||||| |||||| | ||||||||||||    
T  27452689 atctaatggtcaaatttaatttttccatggtaggaaactatttccctttccca 27452637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 27763521 - 27763416
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 156  Q
    ||||||||||||||||| |||||||| ||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  27763521 tctggtgttgagtgtctttgataaaaatatgttctctatttaatctaacggtcaaaattagttttcccttggtgggaaacaacttcccttccccaaatta 27763422  T
Q  157 aatgtc 162  Q
    ||||||    
T  27763421 aatgtc 27763416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 24126018 - 24125977
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  24126018 tttcccatggtgggaaacaactcccctttcccaaattaaatg 24125977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 24126720 - 24126761
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  24126720 tttcccatgatgggaaacaactcccctttcccaaattaaatg 24126761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 3542860 - 3542819
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  3542860 tttcccatggtgggaaaaaactctcctttcccaaattaaatg 3542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 3543065 - 3543106
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  3543065 tttcccatggtgggaaaaaactctcctttcccaaattaaatg 3543106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 7193384 - 7193343
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  7193384 tttcccatggtgggaaagaactctcctttcccaaattaaatg 7193343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 22582481 - 22582522
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  22582481 tttcccatggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 22587312 - 22587353
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  22587312 tttcccatggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 33479742 - 33479701
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  33479742 tttcccatggtgggaaataactctcctttcccaaattaaatg 33479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 33480630 - 33480671
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  33480630 tttcccatggtgggaaagaactctcctttcccaaattaaatg 33480671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 25371235 - 25371183
Alignment:
Q  99 atctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||||||||    ||||||||||||||||||||| ||| ||||||||    
T  25371235 atctaatggtcaaaaaatattttcccatggtgggaaacaagttcactttccca 25371183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 4554764 - 4554671
Alignment:
Q  58 ctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| || |||||||||    
T  4554764 ctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaattttcctttccca 4554671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 4555275 - 4555432
Alignment:
Q  1 agaaagaaaagagagttgagacagctgcaagtggtgggtcaatatggnnnnnnnnntctggtgttgagtgtctatgataaaagtatgttctctactttat 100  Q
    ||||| |||||||||||| |||||||||||| |||||| ||||||||         |  ||||||||||||||| ||||||||||||||||| |||||||    
T  4555275 agaaataaaagagagttgggacagctgcaagcggtgggccaatatggaaaaaaaatt--ggtgttgagtgtctacgataaaagtatgttctccactttat 4555372  T
Q  101 ctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    | || | |||||||||| ||||||||||| ||||||||||||||||||||| | ||||||    
T  4555373 ccaacgttcaaaattagctttcccatggtaggaaacaacttccctttcccatactaaatg 4555432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 26712357 - 26712422
Alignment:
Q  86 tgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||| ||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  26712357 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26712422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 26982095 - 26982160
Alignment:
Q  86 tgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||| ||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  26982095 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26982160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 6805899 - 6805991
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||  ||||||||||||| |||||||| |  |  |||| ||||| |||||||||||||||||||||||||||   ||||||||||||    
T  6805899 tggtgttgatggtctatgataaaattatgttcttttgtaaatctgatggttaaaattagttttcccatggtgggaaactctttccctttccca 6805991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 4789624 - 4789534
Alignment:
Q  61 gtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||| || ||| ||||||  |||||||| | || ||||||||||||| | ||  |||||||||||||||||||||| ||||||||||    
T  4789624 gtgttgagggtttataataaaatcatgttctccatttgatctaatggtcaagaataactttcccatggtgggaaacaactcccctttccca 4789534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 6804775 - 6804858
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttc 142  Q
    |||||||||| | |||||||||   | |||||| ||| | |||||||||||||||||   ||||||||||||||||||||||||    
T  6804775 tggtgttgagagactatgataactatgtgttctttacctaatctaatggtcaaaattgactttcccatggtgggaaacaacttc 6804858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 17767546 - 17767633
Alignment:
Q  72 ctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaat 159  Q
    ||||||||||| |||||||| || || ||||||||||| ||||    |||||||||||||||||||||   ||||||||| |||||||    
T  17767546 ctatgataaaaatatgttctttagttaatctaatggtctaaatctactttcccatggtgggaaacaacgatcctttcccatattaaat 17767633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 9142093 - 9142052
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  9142093 tttcccatggtgggaaacaacttccctttcccatactaaatg 9142052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 8040400 - 8040487
Alignment:
Q  73 tatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||| || ||||||| ||| || ||||||||| ||  ||||  ||||||| ||||||||| || || ||||||||||||||||||    
T  8040400 tatgatagaaatatgttccctatttaatctaatggacatgattaactttcccacggtgggaaagaaatttcctttcccaaattaaatg 8040487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 39167388 - 39167483
Alignment:
Q  65 tgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    |||||||||||||||| | |||| ||| || || |||||||||| ||||    |||||||||| ||||||| || |  ||||||||||||||||||    
T  39167388 tgagtgtctatgataacattatggtctatatttgatctaatggtaaaaaaatattttcccatgatgggaaagaagtctcctttcccaaattaaatg 39167483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 2319312 - 2319271
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  2319312 tttcccatggtgggaaaaaactagcctttcccaaattaaatg 2319271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 8204166 - 8204125
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  8204166 tttcccatggtgggaaagaactctcctttcccaaattaaatg 8204125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 15184019 - 15184060
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  15184019 tttcccatggtgggaaagaactctcctttcccaaattaaatg 15184060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 33002818 - 33002859
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  33002818 tttcccatggtgggaaagaactctcctttcccaaattaaatg 33002859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 39950450 - 39950409
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  39950450 tttcccatggtgggaaagaactctcctttcccaaattaaatg 39950409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 42651581 - 42651613
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttccca 151  Q
    ||||| |||||||||||||||||||||||||||    
T  42651581 tttcctatggtgggaaacaacttccctttccca 42651613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 46757530 - 46757438
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||   |||| |||||||| |||||||| | ||||||||    
T  46757530 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttactttctcatggtggaaaacaactcctctttccca 46757438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 27599317 - 27599216
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||||||||||||||||| | | |||||  ||||| |||||||||||||| |||  |||||||||||||||||||||| ||||||||||  |||||    
T  27599317 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27599218  T
Q  159 tg 160  Q
    ||    
T  27599217 tg 27599216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 46759202 - 46759305
Alignment:
Q  57 tctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaatta 156  Q
    ||||||||| ||| | ||| ||| ||||||||||||||||||||||||||||||| ||||| ||| | ||| |||||||||||| |||||||||| | ||    
T  46759202 tctggtgttaagtatgtataatagaagtatgttctctactttatctaatggtcaagattagctttgctatgatgggaaacaactcccctttcccatacta 46759301  T
Q  157 aatg 160  Q
    ||||    
T  46759302 aatg 46759305  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 27600037 - 27600138
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||||| ||||||||||| | | |||||  ||||| ||||| |||||||| |||  |||||||||||||||||||||| ||||||||||  |||||    
T  27600037 tggtgttgagagtctatgataagaatgtgttcattacttaatctagtggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27600136  T
Q  159 tg 160  Q
    ||    
T  27600137 tg 27600138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 12732350 - 12732261
Alignment:
Q  62 tgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    ||||||| ||||||||||||| |||||||| ||| | ||||||||||||| |||   ||||||||||||||||||   ||||||||||||    
T  12732350 tgttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccatggtgggaaactctttccctttccca 12732261  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 35771201 - 35771293
Alignment:
Q  59 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||| || ||| |||| | |||| ||| ||||| ||||||  ||  ||||||| |||||||||||||||||||||||  ||||||||    
T  35771201 tggtgttgagagtgtataataagactatgctctatacttaatctaaccgtttaaattagctttcccatggtgggaaacaactttgctttccca 35771293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 44909361 - 44909400
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  44909361 tttcccatggtgggaaaaaacttacctttcccaaattaaa 44909400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 45887341 - 45887286
Alignment:
Q  103 aatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    |||||||||||  || ||||||||||||||||| ||||  ||||||||||||||||    
T  45887341 aatggtcaaaaaaagctttcccatggtgggaaaaaactagcctttcccaaattaaa 45887286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 46756312 - 46756277
Alignment:
Q  123 ccatggtgggaaacaacttccctttcccaaattaaa 158  Q
    ||||||||| ||||||||||||||||||||||||||    
T  46756312 ccatggtggaaaacaacttccctttcccaaattaaa 46756277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 47331955 - 47331998
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatgtc 162  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||    
T  47331955 tttcccatggtgggaaaaaactagcctttcccaaattaaatgtc 47331998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 668225 - 668184
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  668225 tttcccatggtgggaaagaactctcctttcccaaattaaatg 668184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 151
Target Start/End: Original strand, 6730162 - 6730191
Alignment:
Q  122 cccatggtgggaaacaacttccctttccca 151  Q
    ||||||||||||||||||||||||||||||    
T  6730162 cccatggtgggaaacaacttccctttccca 6730191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 7677811 - 7677852
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  7677811 tttcccatggtgggaaagaactctcctttcccaaattaaatg 7677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 17145668 - 17145627
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  17145668 tttcccatggtgggaaagaactctcctttcccaaattaaatg 17145627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 37468956 - 37468915
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  37468956 tttcccatggtgggaaagaactctcctttcccaaattaaatg 37468915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 37469007 - 37469048
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  37469007 tttcccatggtgggaaagaactctcctttcccaaattaaatg 37469048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 38778900 - 38778859
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  38778900 tttcccatggtgggaaagaactctcctttcccaaattaaatg 38778859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 38779565 - 38779606
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  38779565 tttcccatggtgggaaagaactctcctttcccaaattaaatg 38779606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 41194559 - 41194518
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  41194559 tttcccatggtgggaaagaactctcctttcccaaattaaatg 41194518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 45887982 - 45888023
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  45887982 tttcccatggtgggaaaaaactagcctttcccaaattaaatg 45888023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 48259804 - 48259861
Alignment:
Q  103 aatggtcaaaattagttttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    |||||||| ||  |||||||||||||||||||| ||||  | ||||||||||||||||    
T  48259804 aatggtcagaaaaagttttcccatggtgggaaaaaactaacatttcccaaattaaatg 48259861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 9122692 - 9122664
Alignment:
Q  123 ccatggtgggaaacaacttccctttccca 151  Q
    |||||||||||||||||||||||||||||    
T  9122692 ccatggtgggaaacaacttccctttccca 9122664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 24995898 - 24995866
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||||||||||||||| ||||||||||    
T  24995898 tttcccatggtgggaaacaactcccctttccca 24995866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 24996685 - 24996717
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttccca 151  Q
    |||||||||||||||||||||| ||||||||||    
T  24996685 tttcccatggtgggaaacaactcccctttccca 24996717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 11873 - 11932
Alignment:
Q  72 ctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgg 131  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||  |||||||||||||    
T  11873 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtgg 11932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 29938 - 29990
Alignment:
Q  97 ttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttcc 149  Q
    |||||||| ||| ||||||||||||||||| |||| ||||||||| |||||||    
T  29938 ttatctaacggttaaaattagttttcccatagtggaaaacaactttcctttcc 29990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 36620 - 36664
Alignment:
Q  97 ttatctaatggtcaaaattagttttcccatggtgggaaacaactt 141  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||    
T  36620 ttatctaacagtcaaaattagttttcccatagtgggaaacaactt 36664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 486 - 565
Alignment:
Q  72 ctatgataaaagtatgttctctactttatctaatggtcaaaattagttttcccatggtgggaaacaacttccctttccca 151  Q
    ||||||||||||| || ||| || || ||||| |||| ||||||   ||| |||||||||||||||||| ||||||||||    
T  486 ctatgataaaagtgtgctctttatttgatctagtggttaaaatttacttttccatggtgggaaacaactcccctttccca 565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 162 - 203
Alignment:
Q  119 tttcccatggtgggaaacaacttccctttcccaaattaaatg 160  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  162 tttcccatggtgggaaagaactctcctttcccaaattaaatg 203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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