View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_low_6 (Length: 499)
Name: NF19306_low_6
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 42673877 - 42673395
Alignment:
| Q |
18 |
ctattttgaatcgagtcttccatggaattggtggcgtgttgtctctttggaaaagacgatcttctaagcttccgttgtctaggtactcgtatatgaggca |
117 |
Q |
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| T |
42673877 |
ctattttgaatcgagtcttccatggaattggtggcgtgttgtctctttggaaaagacgatcttctaagcttccgttgtctaggtactcgtatatgaggca |
42673778 |
T |
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| Q |
118 |
tccgaactccggacaggcccctaaaagtactacaatgttgggatgtcttatggagcctaaaacaaggacctgcattggagtcattaaggttatgaaactt |
217 |
Q |
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| T |
42673777 |
tccgaactccggacaggcccctaaaagtactacaatgttgggatgtcttatggagcctaaaacaaggacctgcattggagtcattaaggttatgaaactt |
42673678 |
T |
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| Q |
218 |
tgaagaaactataatattcatgctacttgtatcttccnnnnnnnnnnnntgcggttacctcttgattaaattgtttctccccttgagtcatatctggtct |
317 |
Q |
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| T |
42673677 |
tgaagaaactataatattcatgctacttgtatcttccaaaaacaaaaaatgttgttacctcttgattaaattgtttctccccttgagtcatatctggtct |
42673578 |
T |
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| Q |
318 |
taaggc-ttaactgcaacatcagtgttgtcaagtactcctttgaaaacaggtccatatccaccttcaccaattttgccatccatatcaaagtaatttgtt |
416 |
Q |
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| T |
42673577 |
taaggctttaactgcaacatcagtgttgtcaagtactcctttgaaaacaggtccatatccaccttcaccaattttgccatccatatcaaagtaatttgtt |
42673478 |
T |
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| Q |
417 |
gcaacttcaatttcttcaatattgtatcttttaaatataaatttgttgcgttcaatttcatttgatgttgtcattctttcttc |
499 |
Q |
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| T |
42673477 |
gcaacttcaatttcttcaatattgtatcttttaaatataaatttgttgcgttcaatttcatttgatgttgtcattctttcttc |
42673395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 6516711 - 6516653
Alignment:
| Q |
35 |
ttccatggaattggtggcgtgttgtctctttggaaaagacgatcttctaagcttccgtt |
93 |
Q |
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| T |
6516711 |
ttccatggaattggtggagtctcgtctttttggaataaacgatcttctaaacttccgtt |
6516653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 438
Target Start/End: Complemental strand, 6516163 - 6516070
Alignment:
| Q |
345 |
tcaagtactcctttgaaaacaggtccatatccaccttcaccaattttgccatccatatcaaagtaatttgttgcaacttcaatttcttcaatat |
438 |
Q |
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| T |
6516163 |
tcaagcacacctttaaaaacaggtccataccccccttcaccaattttgagagcattgtcaaagccattagttgcaacttgaatttctttaatat |
6516070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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