View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19306_low_7 (Length: 499)
Name: NF19306_low_7
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_7 |
 | |
|
| [»] scaffold0565 (2 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 3 - 483
Target Start/End: Original strand, 12073771 - 12074245
Alignment:
| Q |
3 |
tacttttctaatttcatgtttagtaaagnnnnnnntgtttagtaaatgtttacagaaaagcaaagccaaacaagtggttgaagaaggcacaattaaaagc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
12073771 |
tacttttctaatttcatgtttagtaaagaaaaaaatgtttagtaaatgtttacagaaa------gccaaacaagtggttgaagaaggcacaattaaaagc |
12073864 |
T |
|
| Q |
103 |
agaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaactttt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12073865 |
agaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactattctttatggtctttgcaactttt |
12073964 |
T |
|
| Q |
203 |
ttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaatttgcta |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12073965 |
ttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatgcttatgtaacttataatgtgatgttgattataaagaatttgcta |
12074064 |
T |
|
| Q |
303 |
cgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacatacatcaattctttgaattactagagg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12074065 |
cgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacatacatcaattctttgaattactagagg |
12074164 |
T |
|
| Q |
403 |
ccacagtacaattcgatcataaaacattgcaatttggaagtaagtagtactgatatgttgctacaagtgccaagtgggtgt |
483 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
12074165 |
ccacagtacaattcgatcatagaacattgcaatttggaagtaagtagtactgatatgttactacaagtgccaagtgggtgt |
12074245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 373
Target Start/End: Original strand, 12046569 - 12046931
Alignment:
| Q |
6 |
ttttctaatttcatgtttagtaaagnnnnnnntgtttagtaaatgtttacagaaaagcaaagccaaacaagtggttgaagaaggcacaattaaaagcaga |
105 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12046569 |
ttttctaatttcatgtttagtaaagaaaaaaatgtttagtaaatgtttacagaaaagcaaagccaaacaagtggttgaagaaggcacaattaaaagcaaa |
12046668 |
T |
|
| Q |
106 |
aggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaacttttttc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
12046669 |
aggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagtcaacttttatatactactattctttatggtctttgccacttttttc |
12046768 |
T |
|
| Q |
206 |
ttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaatttgctacgt |
305 |
Q |
| |
|
||||| |||||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||||| ||||| |
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|
| T |
12046769 |
ctcaaccctgtttcagttaaattatgagatttctaaatatcaatttaagaatgctcatgtaacttataatatgaggttgattataaagaa-----tacgt |
12046863 |
T |
|
| Q |
306 |
tggaaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtgga |
373 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12046864 |
tggaaaagtgatcttatataggcagttgtctgaaaataatctcaattattggatcataagatggtgga |
12046931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 101 - 472
Target Start/End: Original strand, 12050906 - 12051276
Alignment:
| Q |
101 |
gcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaactt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||| || | |
|
|
| T |
12050906 |
gcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaaatgagccaacttttatatactactattctttatggtctctgccacgt |
12051005 |
T |
|
| Q |
201 |
ttttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaatttgc |
300 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |||| | |
|
|
| T |
12051006 |
ttttcctcaactttgttgcagttcaattatgatatttctaaatatcattttaagaatgcttatgtaacttataatgtgaggttgattataaag-attttc |
12051104 |
T |
|
| Q |
301 |
tacgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacatacatcaattctttgaattactaga |
400 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
12051105 |
tacgttggaaaattgatcttatacaagtaattgtctgaaaataatatcaattattggatcataagatggtggacatatatcaattctttgaaatactaga |
12051204 |
T |
|
| Q |
401 |
ggccacagtacaattcgatcataaaacattgcaatttggaagtaagtagtactgatatgttgctacaagtgc |
472 |
Q |
| |
|
| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
12051205 |
gaccacaatacaattcgatcaatgaacattgcaatttggaagtaaatagtactgatatgttactacatgtgc |
12051276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 434
Target Start/End: Original strand, 12058123 - 12058549
Alignment:
| Q |
6 |
ttttctaatttcatgtttagtaaagnnnnnnntgtttagtaaatgttt-acagaaaagcaaagccaaacaagtggttgaagaaggcac--aat------t |
96 |
Q |
| |
|
|||||| |||||||||| ||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
12058123 |
ttttcttatttcatgttgagtaaagaaaaaaatgtttagtcaatgtttcatagaaaagcaaagccaaacaagtggttgaagaaggtatgtaatgctgctt |
12058222 |
T |
|
| Q |
97 |
aaaagcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgca |
196 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||| | ||||||||||||| | | |
|
|
| T |
12058223 |
gaaggcagaaggtatgaaatcatattgaaaaagtgaacaatcccatacagtcaaaa-ttgagccaacttttatataccaatattctttatggtctctacc |
12058321 |
T |
|
| Q |
197 |
acttttttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaat |
296 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12058322 |
actttttg---------tgtttcagttcaattatgatatttctaaatatcaatttatgaatgcttatgtaacttataatgtgaggttgattataaagaat |
12058412 |
T |
|
| Q |
297 |
ttgctacgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacatacatcaattctttgaattac |
396 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||| ||||||||||||||||||||| ||| |
|
|
| T |
12058413 |
ttgctacgctggaaaagtgatcttatataagtagttgtctgaaaaaaatatcaattattggatcataatatggttgacatacatcaattctttgaaatac |
12058512 |
T |
|
| Q |
397 |
tagaggccacagtacaattcgatcataaaacattgcaa |
434 |
Q |
| |
|
||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
12058513 |
tagaggccacagtacaa-tcgatcatagagcattgcaa |
12058549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 101 - 376
Target Start/End: Original strand, 12066363 - 12066637
Alignment:
| Q |
101 |
gcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaactt |
200 |
Q |
| |
|
||||||||| ||||||| ||||||||| ||||| ||||| ||| |||||||||||||| |||||||||||||| || |||| |||||||||||| | || |
|
|
| T |
12066363 |
gcagaaggtttgaaatcgtattgaaaa-gtgaataatctaacagagttaaaaattgagtcaacttttatatactacgattctatatggtctttgccattt |
12066461 |
T |
|
| Q |
201 |
ttttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaatttgc |
300 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
12066462 |
ttttcctcaactttgtttcaattcaattatgatatttctaaatatcaatttaagaatgcttatgtaacttataatatgaggttgattataaagaatttgc |
12066561 |
T |
|
| Q |
301 |
tacgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacat |
376 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
12066562 |
tacgttggaaaattgatcttatacaagtagttgtctgaaaataatctcaattattggaacataagagggtggacat |
12066637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 101 - 354
Target Start/End: Original strand, 12053434 - 12053686
Alignment:
| Q |
101 |
gcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||||| ||| || |||| |
|
|
| T |
12053434 |
gcagaaggtatgaaatcatattgaaaaagtaaacaatctcacacagttaaaaattgagtcaacttttatatggtactattctttata-tctccgccactt |
12053532 |
T |
|
| Q |
201 |
ttttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaatttgc |
300 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
12053533 |
ttttcctcaaccttgtttcagtttaattatgagatttctaaatatcaatttaagaatgcttatgtaacatataatgtgaggttgattataaagaatttgc |
12053632 |
T |
|
| Q |
301 |
tacgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattat |
354 |
Q |
| |
|
|| |||| |||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
12053633 |
taagttgaaaaagtgatcttatgcaagtagttgtctgaaaataatctcaattat |
12053686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 110 - 392
Target Start/End: Original strand, 12063790 - 12064056
Alignment:
| Q |
110 |
atgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaacttttttcttca |
209 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||| ||| || |||||||| ||| |
|
|
| T |
12063790 |
atgaaattatattgaaaaagcgaacaatctcata--gttaaatattgagccaacttttatataccactattctttatgatctccgccactttttttctca |
12063887 |
T |
|
| Q |
210 |
actttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaatttgctacgttgga |
309 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
12063888 |
actttgtttcaattcaattatgagatttctaaatatcaatttaagaatgctta--------------tgaggttgattgtaaagaatttgctgcgttgga |
12063973 |
T |
|
| Q |
310 |
aaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacatacatcaattctttgaa |
392 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
12063974 |
aaagtaatcttatatgagcagttgtctgaaaataatctcaattattggatcattagatggtggacatacatcaattttttgaa |
12064056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 12050799 - 12050855
Alignment:
| Q |
38 |
tgtttagtaaatgttt-acagaaaagcaaagccaaacaagtggttgaagaaggcaca |
93 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12050799 |
tgtttagtgaatgttttacagaaaagcaaagccaaacaagtggttggagaaggcaca |
12050855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 12053719 - 12053772
Alignment:
| Q |
425 |
aacattgcaatttggaagtaagtagtactgatatgttgctacaagtgccaagtg |
478 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || ||| |||||||||||| |
|
|
| T |
12053719 |
aacattgcaatttggaagtaagtaggactgatatcttactagaagtgccaagtg |
12053772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 102 - 312
Target Start/End: Complemental strand, 30353724 - 30353515
Alignment:
| Q |
102 |
cagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaacttt |
201 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| || | |||||||||||||||||| |||||||| |||| ||||||||||||| ||| |||| |
|
|
| T |
30353724 |
cagaaggtatgaaattatattgaaaaggtgaacaatcccata--gttaaaaattgagccaacctttatatatcactattctttatggtctctgccacttg |
30353627 |
T |
|
| Q |
202 |
tttcttcaactttgtttcagttcaa-ttatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaatttgc |
300 |
Q |
| |
|
| || ||||| ||||||||||||| || | |||||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||| ||| |
|
|
| T |
30353626 |
tctcctcaaccctgtttcagttcaattttttagatttctaaatatcaatttaagaattcttatgtaacttataatttcaggttgattataaagaatctgc |
30353527 |
T |
|
| Q |
301 |
tacgttggaaaa |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30353526 |
tacgttggaaaa |
30353515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 428
Target Start/End: Complemental strand, 1199 - 1136
Alignment:
| Q |
365 |
gatggtggacatacatcaattctttgaattactagaggccacagtacaattcgatcataaaaca |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| ||||| || ||||||||||||| |||| |
|
|
| T |
1199 |
gatggtggacatacatcaattctttgaaatattagaagccacggtgcaattcgatcatagaaca |
1136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 1249 - 1213
Alignment:
| Q |
327 |
gtagttgtctgaaaataatcttaattattggatcata |
363 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
1249 |
gtagttgtctgaacataatcttaattatttgatcata |
1213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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