View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19306_low_8 (Length: 468)
Name: NF19306_low_8
Description: NF19306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19306_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 56072 - 55627
Alignment:
| Q |
19 |
atagggggtgtaagtagctaaagtattatttttacactcgacagtgttcgagaatatgagaaaggtttatatctgattacttccttttcaatctttgctg |
118 |
Q |
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| T |
56072 |
atagggggtgtaagtagctaaattattatttttacacttgacagtgttcgagaatatgataaaggtttatatctgattacttccttttcaatctttgctg |
55973 |
T |
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| Q |
119 |
aaaaatgttcttcatgttgcaattgttttcaattttttgaacactgagataaatgtgcatctcgcactcatagccacattttccattttcgtttcttagg |
218 |
Q |
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| T |
55972 |
aaaaatgttcttcatgttgcaatcgttttcaattttttgaacactgagataaatgtgcatctcgcactcatagcaacattttccattttcgtttcttagg |
55873 |
T |
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| Q |
219 |
agcgtaatctatgcattttgtttacggttcgtttataagttttggattttctgattctgtttttgtatatatcttgattagcaatgtgttgttgaatcta |
318 |
Q |
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| T |
55872 |
agcgtaatctatgcattttgtttatggttcgtttataagttttggattttctgattctgtttttgtatatatcttgattagcaatgtgttgttgaatcta |
55773 |
T |
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| Q |
319 |
ttattaattgtgattaaatttgcaattgtttgatatatattagtccttgtacaaaacttgtttgatgaattttctggattatttgtttttgcaaatacaa |
418 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
55772 |
ttattcattgtgattaaatttgcaattgtttgatatatattagtccttgtacaaaacttgtttgatgaatttcctggatgatttgtttttgcaaatacaa |
55673 |
T |
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| Q |
419 |
atttacacagatatcggacacaataccaacacagacatatagacac |
464 |
Q |
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| T |
55672 |
atttacacagatattggacacaataccaacacagacatatagacac |
55627 |
T |
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