View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19307_high_14 (Length: 353)
Name: NF19307_high_14
Description: NF19307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19307_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 131 - 336
Target Start/End: Original strand, 4296140 - 4296360
Alignment:
| Q |
131 |
ctacagaattgctgctagggcaccatatcaaacaagtaacccaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
230 |
Q |
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| T |
4296140 |
ctacagaattgctgctagggcaccatatcaaacaagtaaccaaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
4296239 |
T |
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| Q |
231 |
tcaccacaagaccacagatcagaatgtagctccagctctgtgtttc---------------tttaactctatatatctatgaactaaatgtttgtgtatg |
315 |
Q |
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| T |
4296240 |
tcaccacaagaccacagatcagaatgtagctccagctctgtgtttctttaacttttctttgtttaactctatatatctatgaactaaatgtttgtgtatg |
4296339 |
T |
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| Q |
316 |
ttgtggctcatgcttattagt |
336 |
Q |
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||||||||||||||||||||| |
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| T |
4296340 |
ttgtggctcatgcttattagt |
4296360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 4301628 - 4301727
Alignment:
| Q |
131 |
ctacagaattgctgctagggcaccatatcaaacaagtaacccaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
230 |
Q |
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| T |
4301628 |
ctacagaattgctgcaaaggcaccatatcaaacaagtaacccaacaaaccttaataagccaattaacgaattcatgtcatggctctccttggcaccacaa |
4301727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 4296018 - 4296078
Alignment:
| Q |
10 |
aagaatattatccccttactttttgtttcgaaatagtttgagtcgtggcaaattgataaac |
70 |
Q |
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| T |
4296018 |
aagaaaattatccccttactttttgtttcgaaatagtttgagtcgtggcaaattgataaac |
4296078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 4307367 - 4307472
Alignment:
| Q |
134 |
cagaattgctgctagggcaccatatcaaacaagtaacccaaaaaaccataataagccaattaatgaattcatgtcatggctctccttggcaccacaatca |
233 |
Q |
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| T |
4307367 |
cagaattgctgccaaggcaccatatcaaacaagcaatccaacaaccattaataaaccaattgatgaatctatgacatggctctctttggcaccacaatca |
4307466 |
T |
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| Q |
234 |
ccacaa |
239 |
Q |
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|||||| |
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| T |
4307467 |
ccacaa |
4307472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 4311923 - 4312024
Alignment:
| Q |
134 |
cagaattgctgctagggcaccatatcaaacaagtaacccaaaaaa---ccataataagccaattaatgaattcatgtcatggctctccttggcaccacaa |
230 |
Q |
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|||||||||||| | |||||| |||||||||||||| ||| | || ||||||||||||| |||||| |||||||||||| ||||||||||||||| |
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| T |
4311923 |
cagaattgctgcaaaggcaccttatcaaacaagtaatccagcagcattccttaataagccaattgatgaatccatgtcatggctatccttggcaccacaa |
4312022 |
T |
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| Q |
231 |
tc |
232 |
Q |
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|| |
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| T |
4312023 |
tc |
4312024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 4301865 - 4301902
Alignment:
| Q |
299 |
ctaaatgtttgtgtatgttgtggctcatgcttattagt |
336 |
Q |
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|||||| |||||| |||||||||||||||||||||||| |
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| T |
4301865 |
ctaaatatttgtgaatgttgtggctcatgcttattagt |
4301902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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